Protein Alignment bsh and Lmx1a

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_729801.1
• Gene: Lmx1a / 39406
• FlyBaseID: FBgn0052105
• Length: 640
• Species: Drosophila melanogaster
• Alignment Length: 512
• Identity: 104/512 - (20%)
• Similarity: 170/512 - (33%)
• Gaps: 147/512 - (28%)

  Fly    17 HANATTPTHSKAAAMASATTMLTTKTPFSIEHILFQNLNSASNNNNSSDTNGIAANTNNYAPKS- 80
            ||.:|||           ..:.:..||.....:...:.||..||||:::..|.::|..:.|..:
  Fly   102 HAASTTP-----------VPINSCPTPTGHSPLSSSSSNSNHNNNNNNNNGGSSSNNLHSACNTL 155

  Fly    81 SRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHS 145
            :..||.:|.:|.....:|.......|....:...|.|:|:|.|.|.:...::|.|....|.:..|
  Fly   156 TAAAVAAASAAAVAAPSPAGTSVATSQLGGAVAAAIAAAAAAAAAATTPTSTGPAATGSGNANGS 220

  Fly   146 TPRSNHHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGS-------------- 196
            ...:.:.:.:|..:.||:      |.|||.......::...........|.
  Fly   221 GNGNGNGNGNGNGNGNGN------GGGAATASAAAASKLSADCSGRTEVGHIKCEKNFELCEGCG 279

  Fly   197 -----------GASN-----------GVLYPNAPYTDHGFLQMTLGY--------------LSPS 225
                       |.:|           |:...:..|..:..|...:.|              :.|.
  Fly   280 QKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCHAILPQ 344

  Fly   226 SGTYKSVD------PYFLSQA---SLFGGAPFFGAPG---CV-PELALGLGMGVNALRHC----- 272
            ....:.:.      |.|:..|   .|..|..|....|   |. .:|...:.:...|.:||
  Fly   345 ELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHCGFVGL 409

  Fly   273 -----------RR--RKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQN 324
                       ||  ::.||:.:..|....:..|:.........|..||...|||...|:.||||
  Fly   410 DEEDLLRPRDGRRGPKRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQN 474

  Fly   325 RRMKHKKQLRRRDNANEPVDFSRSEPGKQPGEATSSSGDSKHGKLNPGSVGGTPTQPTSEQQLQM 389
            :|.|.||..|:               .||.|.:...||..:    ..|:...|..:.|:::: ..
  Fly   475 QRAKMKKIQRK---------------AKQNGGSGGGSGSGR----GTGNSSATDDKDTNDKE-DK 519

  Fly   390 CLMQQ------GY-------------------STDDYSDLEADSGDEDNSSDVDIVG 421
            |:.|:      ||                   |.|||   .|:|.|...|||:.:.|
  Fly   520 CVKQELGGDSSGYLGGLDSTFASQPLNPNLPFSPDDY---PANSNDSFCSSDLSLDG 573

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	17/55 (31%)
Lmx1a	NP_729801.1	LIM1_Lmx1b	275..327	CDD:188757	5/51 (10%)
		LIM	333..388	CDD:413332	9/54 (17%)
		Homeodomain	425..481	CDD:459649	17/55 (31%)