DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and emx1

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_937787.1 Gene:emx1 / 378964 ZFINID:ZDB-GENE-031007-7 Length:231 Species:Danio rerio


Alignment Length:229 Identity:67/229 - (29%)
Similarity:90/229 - (39%) Gaps:77/229 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 PASASASATATARSN--QAASG---YAGED--YGKSMHSTPRSNHHSRHGTSHYNGDQISQQLGS 171
            |.:.|.||.|.:..|  |:.:|   |...:  :.::::..|.|.|              ..||||
Zfish    30 PTALSYSAPADSFLNGYQSPAGRALYPNPELVFSETVNHAPLSMH--------------PHQLGS 80

  Fly   172 GAAQHPPVPTTQPQPPPPPPLNGGSGASNGVLYP---NAPYTDHGFLQMTLGYLSPSSGTYKSVD 233
            ...|||....||.:    .|||         .||   ...:..|.|               :..|
Zfish    81 APLQHPHFFGTQHR----EPLN---------FYPWVLRNRFFGHRF---------------QGND 117

  Fly   234 PYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRY 298
               :||.:|....||...|                      ::.||.||..||..||:.||...|
Zfish   118 ---VSQDTLLLHGPFARKP----------------------KRIRTAFSPSQLLRLERAFEKNHY 157

  Fly   299 LSTPERVELATALGLSETQVKTWFQNRRMKHKKQ 332
            :...||.:||.:|.|||||||.||||||.|:|:|
Zfish   158 VVGAERKQLANSLSLSETQVKVWFQNRRTKYKRQ 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 30/55 (55%)
emx1NP_937787.1 Homeodomain 134..190 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 193..231
Blue background indicates that the domain is not in the aligned region.

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