Protein Alignment bsh and Hoxd12

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001178832.1
• Gene: Hoxd12 / 366082
• RGDID: 1309797
• Length: 268
• Species: Rattus norvegicus
• Alignment Length: 248
• Identity: 65/248 - (26%)
• Similarity: 97/248 - (39%)
• Gaps: 47/248 - (18%)

  Fly   106 SHPPQSHPPASASASATATARSNQAASGYAGEDY----GKSMHSTPRSNHHSRHGTSHYNGDQIS 166
            |:|..:.|.|:..||.|....:..:|.|...:.|    |.....:|        ||.....||:.
  Rat    43 SYPRSALPWAATPASCTPAQPTTASAFGGFSQPYLTGSGPIGLQSP--------GTKDGPEDQVK 99

  Fly   167 QQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYK- 230
            ......|....  ..::.:||..|..:....|..|..|..|.........:||...:|.:..:|
  Rat   100 FYTPDAATASE--ERSRTRPPFAPESSLVHSALKGTKYDFAGVGRAAPGSVTLLQGAPCASNFKE 162

  Fly   231 -SVDPYFLSQA------------SLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRKARTVFS 282
             :..|..|:.|            ||..|.|:..|||                   |.||.|..::
  Rat   163 DTKGPLNLNMAVQVAGVASCLRSSLPDGLPWGAAPG-------------------RARKKRKPYT 208

  Fly   283 DPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRR 335
            ..|::.||..|....:::..:|.||:..|.||:.|||.||||||||.|:.::|
  Rat   209 KQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVQR 261

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	24/55 (44%)
Hoxd12	NP_001178832.1	Homeodomain	201..257	CDD:459649	24/55 (44%)