Protein Alignment bsh and Lim3

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Alignment Length: 446
• Identity: 81/446 - (18%)
• Similarity: 118/446 - (26%)
• Gaps: 201/446 - (45%)

  Fly    99 HKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHSTPRSNH------HSRHGT 157
            |:|..|..||||..|                       ..:.:..|...:..|      |.:|..
  Fly    15 HQHQHQLQHPPQQQP-----------------------HPHQQLQHPLQQQQHLSAMDNHQQHQP 56

  Fly   158 SHYNGDQISQQLGSGAAQHPPVPTT---------QPQPP-----------PPPPLNGGSGASNGV 202
            ..:...|..|||       ||.|..         |.|.|           |.|.|.....:.|..
  Fly    57 HIHQQQQQQQQL-------PPTPQASHLVGGQQQQQQHPHHNHLAVDQDDPNPELVLALISRNRA 114

  Fly   203 LYPNAPYTD-----------------------------HGFLQMTLGYLSPSSGTYKSVDPYFLS 238
            |....|...                             ||.|.                |..|..
  Fly   115 LEATIPKCGGCHELILDRFILKVLERTWHAKCLQCSECHGQLN----------------DKCFAR 163

  Fly   239 QASLFGGAPFFGAPG--CVPELALGLGMGV----------NALRH-------------------- 271
            ...||....||...|  |     ....||:          :.:.|
  Fly   164 NGQLFCKEDFFKRYGTKC-----SACDMGIPPTQVVRRAQDNVYHLQCFLCAMCSRTLNTGDEFY 223

  Fly   272 --------CRR----RKARTVFSDPQLSG-----------LEKRFEGQR--YLSTPE-----RVE 306
                    |:|    .||:.::.|..|.|           ..|:.|..:  |.::|:     |.:
  Fly   224 LMEDRKLICKRDYEEAKAKGLYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQ 288

  Fly   307 LATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEPGKQPGEATSSSGDSKHGKLNP 371
            |:...||....|:.||||||.| :|:|::.........:.||..|.
  Fly   289 LSQDTGLDMRVVQVWFQNRRAK-EKRLKKDAGRTRWSQYFRSMKGN------------------- 333

  Fly   372 GSVGGTPTQPTSEQQLQMCLMQQGYSTDDYSDLEADS------GDEDNSSDVDIVG 421
                   ..|.:::.|....::..|.:..:.||..||      |.::.:|...|.|
  Fly   334 -------CSPRTDKFLDKDELKVDYDSFSHHDLSNDSYSTVNLGLDEGASPHSIRG 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	21/73 (29%)
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	7/66 (11%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	6/59 (10%)
		Homeodomain	257..313	CDD:459649	16/56 (29%)