DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and hoxd3a

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_571200.1 Gene:hoxd3a / 30349 ZFINID:ZDB-GENE-990415-120 Length:396 Species:Danio rerio


Alignment Length:348 Identity:91/348 - (26%)
Similarity:119/348 - (34%) Gaps:115/348 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 ATARSNQAASGYAGEDYGKSMHSTPRSNHHSRHGTS---------------------HYNGD--- 163
            ||...|  |..:.|..|.||...|....|.....:|                     |.|||   
Zfish     4 ATYYDN--AGLFGGYSYPKSDSYTYGPTHQGFSSSSIENDYQSPICPIQTTSVRQATHKNGDING 66

  Fly   164 ---------------QIS--QQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASNGV---LYPNAP 208
                           .||  ||....||..|...|...|....|..||.|.|:..:   ::|...
Zfish    67 SCMRPSASQGNSQPESISEQQQAAPLAASSPSPSTNSTQKKKSPSSNGSSTATPVISKQIFPWMK 131

  Fly   209 YTDHGFLQMTLGYLSPSSG-TYKSVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHC 272
            .|.....|.:..  .|::| |.....|                 ||..                 
Zfish   132 ETRQNAKQKSTN--CPAAGETCDDKSP-----------------PGPA----------------- 160

  Fly   273 RRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRD 337
             .::.||.::..||..|||.|...|||..|.|||:|..|.|:|.|:|.||||||||:||..:.:.
Zfish   161 -SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKSKG 224

  Fly   338 NANEPVDFSRSEPGKQPGEATSSSGDSKH----GKL-NPGSVG-GTPTQPT--SEQQ-------- 386
            ..:.|:       |..|..:...|| |.|    |:| |..|:. ..|:.|:  ..||        
Zfish   225 IMHSPL-------GHSPDRSPPLSG-SNHIGYSGQLPNVNSLSYDAPSPPSFAKPQQNIYGLAAY 281

  Fly   387 ---LQMCLMQQ----GYSTDDYS 402
               |..|:.||    |...|.:|
Zfish   282 TAPLGGCIPQQKRYPGTEYDHHS 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 29/55 (53%)
hoxd3aNP_571200.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 18..163 33/181 (18%)
COG5576 116..237 CDD:227863 45/164 (27%)
Antp-type hexapeptide 126..131 1/4 (25%)
Homeodomain 162..218 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 219..246 6/34 (18%)
DUF4074 333..394 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 364..396
Blue background indicates that the domain is not in the aligned region.

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