Protein Alignment bsh and Hoxb13

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001100511.1
• Gene: Hoxb13 / 303480
• RGDID: 1309113
• Length: 286
• Species: Rattus norvegicus
• Alignment Length: 280
• Identity: 73/280 - (26%)
• Similarity: 108/280 - (38%)
• Gaps: 65/280 - (23%)

  Fly   105 HSHPPQSHPPASASASATATARSNQAASGYAGE-DYGKSMH--------STPRSNHHSRHGTSHY 160
            ||.|..|||     |:.|.....|.|.....|. :..|..|        ::|....:...|..:|
  Rat    30 HSSPLASHP-----AAPTLMPTVNYAPLDLPGSAEPPKQCHPCPGVPQGASPAPVPYGYFGGGYY 89

  Fly   161 NGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASNGVLYPNAP--------YTDHGFLQM 217
            : .::|:......||...: .|.|...|.|.....|..:....||..|        |.|...:|
  Rat    90 S-CRVSRSSLKPCAQTATL-ATYPSETPAPGEEYPSRPTEFAFYPGYPGPYQPMASYLDVSVVQ- 151

  Fly   218 TLGYLSPSSGTYKS---VDPYFLSQASLFGG--------------APFFGAPGCVPELALGLGMG 265
            |||  :|....:.|   ||.|  ...:|.||              .||:.|....|
  Rat   152 TLG--APGEPRHDSLLPVDSY--QPWALAGGWNSQMCCQGEQNPPGPFWKAAFAEP--------- 203

  Fly   266 VNALRH-----C---RRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWF 322
              :::|     |   |.||.|..:|..||..||:.:...::::..:|.:::.|..|||.|:..||
  Rat   204 --SVQHPPPDGCAFRRGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWF 266

  Fly   323 QNRRMKHKKQLRRRDNANEP 342
            ||||:|.||.|.:...:..|
  Rat   267 QNRRVKEKKVLAKVKTSTTP 286

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	21/55 (38%)
Hoxb13	NP_001100511.1	HoxA13_N	12..124	CDD:463521	23/100 (23%)
		Homeodomain	219..275	CDD:459649	21/55 (38%)