DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bsh and hoxb6a

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_571194.1 Gene:hoxb6a / 30341 ZFINID:ZDB-GENE-990415-106 Length:228 Species:Danio rerio


Alignment Length:236 Identity:58/236 - (24%)
Similarity:85/236 - (36%) Gaps:85/236 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 QHSHPPQSHPPASASAS-ATATARSNQA-ASGYAGEDYGKSM-----HSTPRSNHHSRHGTSHYN 161
            :.::|...:..|:.:.| |||....:.| ||.|..:|...::     ||...|..|.:...:...
Zfish    51 EKAYPSSFYQQANGAYSRATAAGPCDYATASFYREKDPACALASIEEHSFVLSQDHRKTDCTGST 115

  Fly   162 GDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASNGVLYPNAPYTDHGFLQMTLGYLSPSS 226
            |..|             .|....|.|..|            :||        ::|.    ::..:
Zfish   116 GKSI-------------YPEADEQKPSAP------------VYP--------WMQR----MNSCN 143

  Fly   227 GTYKSVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEK 291
            ||                    ||..|                     |:.|..::..|...|||
Zfish   144 GT--------------------FGNAG---------------------RRGRQTYTRYQTLELEK 167

  Fly   292 RFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQ 332
            .|...|||:...|:|:|.||.|:|.|:|.||||||||.||:
Zfish   168 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 208

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 27/55 (49%)
hoxb6aNP_571194.1 Antp-type hexapeptide 132..137 2/12 (17%)
Homeodomain 151..207 CDD:459649 27/55 (49%)

Return to query results.
Submit another query.