Protein Alignment bsh and Cdx4

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 344
• Identity: 85/344 - (24%)
• Similarity: 121/344 - (35%)
• Gaps: 95/344 - (27%)

  Fly    60 NNNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATAT 124
            |.....|.|:..:..:.:|..:.|.  :|...:     ||.....|......|.|:..:.|
  Rat    20 NPGGGSTAGVGTSGGSGSPLPASNF--TAAPVY-----PHYMGYPHMSNMDPHGPSLGAWS---- 73

  Fly   125 ARSNQAASGYAGEDYGKSMHSTPRSNHHSRHGTSHYNG-----DQISQQLGSGAAQHPPVPTTQP 184
                             |.:|.||.:..:..|.|...|     |..|.....|:..:..:
  Rat    74 -----------------SPYSPPREDWSTYPGPSSTMGTVPMNDMTSSSPAFGSPDYSTL----- 116

  Fly   185 QPPPPPPLNGGSGASNGVLYPNAP-----YTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFG 244
                 .|..|..|||||...|:|.     ..|.|   .:.|..|||...:   .||...:.:
  Rat   117 -----GPTGGAGGASNGGSLPDAASESLVSIDSG---TSGGATSPSRSRH---SPYAWMRKT--- 167

  Fly   245 GAPFFGAPGCVPELALGLGMGVNALRHCR-RRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELA 308
                                 |......| :.|.|.|::|.|...|||.|...||::...:.|||
  Rat   168 ---------------------VQVTGKTRTKEKYRVVYTDHQRLELEKEFHCNRYITIRRKSELA 211

  Fly   309 TALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEPGKQPGEATSSSGDSKHGKLNPGS 373
            ..|||||.|||.||||||.|.:|.::::.:..|          ...|...|.||....|:| |.:
  Rat   212 VNLGLSERQVKIWFQNRRAKERKMIKKKISQFE----------NSGGSVQSDSGSISPGEL-PNA 265

  Fly   374 VGGTPT-----QPTSEQQL 387
            ...||:     ||...||:
  Rat   266 FFTTPSAVRGFQPIEIQQV 284

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	29/55 (53%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	40/221 (18%)
		Homeodomain	179..234	CDD:459649	29/54 (54%)