DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bsh and Obox2

DIOPT Version :9

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:XP_038953187.1 Gene:Obox2 / 292574 RGDID:1307972 Length:326 Species:Rattus norvegicus


Alignment Length:306 Identity:76/306 - (24%)
Similarity:110/306 - (35%) Gaps:98/306 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNGGSGASNGVLY---------PNAPYTD 211
            |.|.|...|:|        .:.|:.|:. |.|..|..|.........|.         |:.|   
  Rat    19 GPSFYPKFQMS--------SYTPMDTSS-QLPQEPAWNLAFQMGQSPLVTSRTPMQSSPSVP--- 71

  Fly   212 HGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRK 276
                :..|.: ..|.|:.:...|..||..  :||..                .|..|.|  :|||
  Rat    72 ----EQNLNW-QESQGSSRESKPMALSDK--YGGKQ----------------TGPVAPR--KRRK 111

  Fly   277 ARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANE 341
            .||.:|:.|.|.|::.|...:|......:|||:.:.::|.::|.||:|.|.|.|::       |.
  Rat   112 ERTQYSEKQKSVLQEHFAECQYPDKKLCLELASLIRVTEKEIKVWFKNNRAKCKQK-------NV 169

  Fly   342 PVDFSRSEPGKQPG-EATSSSGDSKHGKLNPGS---VGGTPTQP----------------TSEQQ 386
            |    .:.|.|..| ||.|.|.|.      |||   |||...:|                :.|..
  Rat   170 P----EALPEKNGGSEAVSGSTDF------PGSIAVVGGDQGEPMATAILDVDSTPKLNCSQESS 224

  Fly   387 LQ--------MCLMQQGYSTDDYSDLEA--DSGDEDNSSDVDIVGD 422
            |.        ||.:     .:|..|..|  .:||...|:.|:...|
  Rat   225 LDGNWTYDGAMCCL-----PEDLLDGNAPVTAGDFGESAPVEAQSD 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeobox 278..330 CDD:278475 18/51 (35%)
Obox2XP_038953187.1 HOX 109..165 CDD:197696 21/55 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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