Protein Alignment bsh and Hoxd3

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001257967.1
• Gene: Hoxd3 / 288152
• RGDID: 1588601
• Length: 432
• Species: Rattus norvegicus
• Alignment Length: 337
• Identity: 92/337 - (27%)
• Similarity: 125/337 - (37%)
• Gaps: 100/337 - (29%)

  Fly   105 HSHPPQSHPPASASASATATARSNQAASGYAGEDYGKS----MHSTP-RSNHHS---------RH 155
            :|.|.|.:||.:|:.|..:              ||..|    ..|.| |:..|.         |.
  Rat    43 YSTPHQPYPPPAAANSLDS--------------DYPSSACSIQSSAPLRAPAHKGAELNGSCMRP 93

  Fly   156 GTSHYNGDQISQQLGSGAAQHPPVPTTQ--PQPPPPP-------PLNGGSG-----ASNGVLYPN 206
            ||.:..|       |.|..|.|.:.:.|  |||||||       |.|.|||     ...|   ||
  Rat    94 GTGNSQG-------GGGGNQPPGLNSEQQPPQPPPPPPTLPPSSPTNPGSGVPAKKTKGG---PN 148

  Fly   207 APYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRH 271
            |..:.....:....::..|....|..:....|..:....:|    ||..
  Rat   149 ASSSSSTISKQIFPWMKESRQNSKQKNSCATSGENCEDKSP----PGPA---------------- 193

  Fly   272 CRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRR 336
              .::.||.::..||..|||.|...|||..|.|||:|..|.|:|.|:|.||||||||:||..:.:
  Rat   194 --SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAK 256

  Fly   337 DNANEPVDFSRSEPGKQPGEATSSSGDSKH----GKLN--PGSVGGTPTQPTSEQQ--------- 386
            ...:.|.       |:.|..:....|.:.|    |:|.  ||.....|:.|...:.
  Rat   257 GILHSPA-------GQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMYGLAA 314

  Fly   387 ----LQMCLMQQ 394
                |..||.||
  Rat   315 YTAPLSSCLPQQ 326

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	29/55 (53%)
Hoxd3	NP_001257967.1	Homeodomain	195..251	CDD:459649	29/55 (53%)
		DUF4074	369..430	CDD:463833