Protein Alignment bsh and Hoxd1

DIOPT Version :10

• Sequence 1: NP_477350.2
• Gene: bsh / 35266
• FlyBaseID: FBgn0000529
• Length: 429
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 355
• Identity: 89/355 - (25%)
• Similarity: 125/355 - (35%)
• Gaps: 87/355 - (24%)

  Fly    66 TNGIAANTNNYAPKSSRNAVK-----------SARSAFAH---------DNNPHKHPSQHSHPPQ 110
            :.|:..:...:|||..|...:           |...||..         ..:|...|:|   ||.
  Rat    16 SGGVGGDVLGFAPKFCRADARPVALQPAFPLGSGDGAFVSCLPLAAARPTPSPPVAPAQ---PPG 77

  Fly   111 SHPPASASASATATARSNQAASGYAGEDYGKSMHSTPR-------------SNHHSRHGTS--HY 160
            ..|.||..|..|......:.|:..:..:|| .:.|.|.             |..|..:.||  ..
  Rat    78 PQPAASRYAPCTLEGAYERGAAPASAAEYG-FLGSGPAFDFPGALGRAADDSGPHVHYATSAVFS 141

  Fly   161 NGDQ--ISQQLGSGAAQHP-PVPTTQPQPPP--PPPLNGGSGASNGVLYPNAPYTDHGFLQMTLG 220
            :|..  :|.|:...|...| |.|....:|..  |.|....|.|......|.:|.:.......|..
  Rat   142 SGGSFLLSGQVDFAAFAEPGPFPACLKEPADGHPGPFQTVSPAPGACPKPASPTSGLPAAHSTFE 206

  Fly   221 YLSPSSGTYKSVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRKARTVFSDPQ 285
            ::.......|.      |:.|.:|...        |..|:                 ||.||..|
  Rat   207 WMKVKRNAPKK------SKLSEYGATS--------PSSAI-----------------RTNFSTKQ 240

  Fly   286 LSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEP 350
            |:.|||.|...:||:...|:|:|..|.|::||||.||||||||.||:.|....|......|...|
  Rat   241 LTELEKEFHFNKYLTRARRMEIANCLQLNDTQVKIWFQNRRMKQKKREREGLLATAASVASLQLP 305

  Fly   351 GKQPGEATSSSGDSKHGKLNPGSVGGTPTQ 380
            |            |:...:..|...|:|:|
  Rat   306 G------------SETSPIKSGRNLGSPSQ 323

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bsh	NP_477350.2	Homeodomain	275..331	CDD:459649	29/55 (53%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	47/159 (30%)
		Homeodomain	233..286	CDD:459649	29/52 (56%)