DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bsh and Hoxc6

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:XP_063119084.1 Gene:Hoxc6 / 252885 RGDID:620626 Length:264 Species:Rattus norvegicus


Alignment Length:321 Identity:85/321 - (26%)
Similarity:116/321 - (36%) Gaps:98/321 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 NNYAPKSSRNAV-KSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGE 137
            |:|.|:.|.... ::..|.|.|.:       |..:||   ||...|               |...
  Rat    26 NSYIPEHSPEYYGRTRESGFQHHH-------QELYPP---PPPRPS---------------YPER 65

  Fly   138 DYG-KSMHSTPRSNHHSRHGTSHYNGDQISQQLG-----SGAAQHP-PVPTTQPQPPPPPPLNGG 195
            .|. .|:.....|..|......|::.:: ||.|.     |||:..| |.|....||.|..|.:..
  Rat    66 QYSCTSLQGPGNSRAHGPAQAGHHHPEK-SQPLCEPAPLSGASASPSPAPPACSQPAPDHPSSAA 129

  Fly   196 SGASNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFGAPGCVPELAL 260
            |  ...::||          .|...::|..:..|.             ||.|             
  Rat   130 S--KQPIVYP----------WMKKIHVSTVNPNYN-------------GGEP------------- 156

  Fly   261 GLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNR 325
                          :::||.::..|:..|||.|...|||:...|:|:|.:|.|||.|:|.|||||
  Rat   157 --------------KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNR 207

  Fly   326 RMKHKKQLRRRDNANEPVDFSRSEPGKQPGEATSSSGDSKHGKLNPGSVGGTPTQPTSEQQ 386
            |||.||..|.      |....||.|  ..|.|.|:...:..|.....|...||    .|||
  Rat   208 RMKWKKDHRL------PNTKVRSAP--PAGAAPSTLSAATPGTSEDHSQSATP----PEQQ 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 27/55 (49%)
Hoxc6XP_063119084.1 None

Return to query results.
Submit another query.