DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and Hoxd8

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_032302.2 Gene:Hoxd8 / 15437 MGIID:96209 Length:289 Species:Mus musculus


Alignment Length:388 Identity:104/388 - (26%)
Similarity:131/388 - (33%) Gaps:138/388 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 PTHS--KAAAMASATTMLTTKTPFSIEHILFQNLNSASNNNNSSDTNGIAANTNNY----APK-S 80
            |.:|  ||||.|:|..                          ::...|.|.|...|    ||: |
Mouse     8 PLYSKYKAAAAAAAAA--------------------------AAAAAGEAINPTYYDCHFAPEVS 46

  Fly    81 SRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHS 145
            .|:|........:....||.||..|.||  |.||.........           .|:||..:...
Mouse    47 GRHAAALQLYGNSAAGFPHAHPHPHPHP--SPPPGCGGGGGPG-----------PGQDYFHAGAG 98

  Fly   146 TPRSNHHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPPPPLNG----GSGA-------- 198
            :|         |:.|.           ||..||.|   |.||||||..|    |..|        
Mouse    99 SP---------TAAYQ-----------AAPPPPHP---PPPPPPPPCGGIACHGEPAKFYGYDNL 140

  Fly   199 -----------SNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASLFGGAPFFGAP 252
                       :..|.||:.               ..|||.. ..||..|:|:|    :|....|
Mouse   141 QRQPIFTTQQEAELVQYPDC---------------KSSSGNI-GEDPDHLNQSS----SPSQMFP 185

  Fly   253 GCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQ 317
            ...|:.|.|            ||:.|..:|..|...|||.|....||:...|:|::..|.|:|.|
Mouse   186 WMRPQAAPG------------RRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHTLALTERQ 238

  Fly   318 VKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEPGKQPGEATSS-SGDSKHGKLNPGSVGGTPT 379
            ||.||||||||.||:       |....|..|.|..:.|:.... ||      |......|.||
Mouse   239 VKIWFQNRRMKWKKE-------NNKDKFPASRPEAKDGDPKKEVSG------LEEDGAEGCPT 288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 26/55 (47%)
Hoxd8NP_032302.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..125 28/98 (29%)
COG5576 139..272 CDD:227863 50/171 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 162..184 9/26 (35%)
Antp-type hexapeptide 183..188 1/4 (25%)
Homeodomain 196..252 CDD:459649 26/55 (47%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 252..289 12/50 (24%)

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