DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and Hoxd3

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_034598.2 Gene:Hoxd3 / 15434 MGIID:96207 Length:433 Species:Mus musculus


Alignment Length:363 Identity:95/363 - (26%)
Similarity:139/363 - (38%) Gaps:99/363 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 NNSSDTNGIAANTNNYAPKSSRNAVKSARSAFAHDNNPHKHPSQHSHPPQSHPPASASASATATA 125
            :.::||.|.:.....|.|.::.|::.|                       .:|.::.|..::|..
Mouse    35 SKATDTYGYSTPHQPYPPPAAANSLDS-----------------------DYPSSACSIQSSAPL 76

  Fly   126 RSNQAASGYAGEDYGKSMHSTPRSNHHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQ--PQPPP 188
            |    |..:.|.:...|.         .|.||.:..|       |.|..|.|.:.:.|  |||||
Mouse    77 R----APAHKGAELNGSC---------MRPGTGNSQG-------GGGGNQPPGLNSEQQPPQPPP 121

  Fly   189 PPPLNGGSGASNGVLYPNAPYTDHGF---LQMTLGYLSPSSGT---YKSVDPYFLS--QASLFGG 245
            |||         ..|.|::| |:.|.   .:.|.|.||.||.:   .|.:.|:...  |.|....
Mouse   122 PPP---------PTLPPSSP-TNPGSGVPAKKTKGGLSASSSSSTISKQIFPWMKESRQNSKQKN 176

  Fly   246 APFFGAPGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATA 310
            :.......|..:...|..          .::.||.::..||..|||.|...|||..|.|||:|..
Mouse   177 SCATSGENCEDKSPPGPA----------SKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANL 231

  Fly   311 LGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEPGKQPGEATSSSGDSKH----GKLN- 370
            |.|:|.|:|.||||||||:||..:.:...:.|.       |:.|..:....|.:.|    |:|. 
Mouse   232 LNLTERQIKIWFQNRRMKYKKDQKAKGILHSPA-------GQSPERSPPLGGAAGHVAYSGQLPP 289

  Fly   371 -PGSVGGTPTQPTSEQQ-------------LQMCLMQQ 394
             ||.....|:.|...:.             |..||.||
Mouse   290 VPGLAYDAPSPPAFAKSQPNMYGLAAYTAPLSSCLPQQ 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 29/55 (53%)
Hoxd3NP_034598.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 44..198 45/216 (21%)
Antp-type hexapeptide 161..166 1/4 (25%)
Homeodomain 196..252 CDD:459649 29/55 (53%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 258..280 4/28 (14%)
DUF4074 370..431 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..433
Blue background indicates that the domain is not in the aligned region.

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