DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and Hoxc8

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_034596.1 Gene:Hoxc8 / 15426 MGIID:96198 Length:242 Species:Mus musculus


Alignment Length:258 Identity:68/258 - (26%)
Similarity:96/258 - (37%) Gaps:68/258 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 ATARSNQAASGYAGEDYGKSMHSTPRSNHHSRHGTS--HYNGDQISQQLGSGAAQHPPVPTTQP- 184
            :..||:....|..|        |.|...|.|.|...  |:....||   .||..|:|...:... 
Mouse    31 SVGRSHALVYGPGG--------SAPGFQHASHHVQDFFHHGTSGIS---NSGYQQNPCSLSCHGD 84

  Fly   185 -------QPPPPPPLNGGSGASNGVLYPNAPYTDHGFLQMTLGYLSPSSGTYKSVDPYFLSQASL 242
                   :..|...|.|....::.|.||:...:.:.......|:|:.:|           |.:.:
Mouse    85 ASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQNS-----------SPSLM 138

  Fly   243 FGGAPFF--GAPGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERV 305
            |   |:.  .|||                    ||..|..:|..|...|||.|....||:...|:
Mouse   139 F---PWMRPHAPG--------------------RRSGRQTYSRYQTLELEKEFLFNPYLTRKRRI 180

  Fly   306 ELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVDFSRSEPGKQPGEATSSSGDSKHGK 368
            |::.||||:|.|||.||||||||.||: ..:|..          ||.:..|.....|:.:..|
Mouse   181 EVSHALGLTERQVKIWFQNRRMKWKKE-NNKDKL----------PGARDEEKVEEEGNEEEEK 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 28/55 (51%)
Hoxc8NP_034596.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..154 11/73 (15%)
Antp-type hexapeptide 138..143 2/7 (29%)
Homeodomain 150..206 CDD:459649 28/55 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 206..242 7/38 (18%)

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