DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and Hoxa3

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:375 Identity:90/375 - (24%)
Similarity:115/375 - (30%) Gaps:160/375 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 NGIAANTNN--YAPKSSRN-----------AVKSARSAFAHD-------------NNPHKHPSQH 105
            ||.|.|.:.  |||.::..           :::|..||..|.             :.|...|...
Mouse    22 NGFAYNASQQPYAPSAALGTDGVEYHRPACSLQSPASAGGHPKTHELSEACLRTLSGPPSQPPGL 86

  Fly   106 SHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHSTPRSNHHSRHGTSHYNGDQISQQLG 170
            ..||...||..|:.                                                   
Mouse    87 GEPPLPPPPPQAAP--------------------------------------------------- 100

  Fly   171 SGAAQHPPVPTTQP------QPPPP----PPLNGGSG------ASNGVLYPNAPYTDHGFLQMTL 219
              .|..||.|..||      .||||    ||.:..|.      |.:.:|  |:|         |:
Mouse   101 --PAPQPPQPPPQPPAPTPAAPPPPSSVSPPQSANSNPTPASTAKSPLL--NSP---------TV 152

  Fly   220 G-----YLSPSSGTYKSVDPYFLSQASLFGGAPFFGAPGCVPELALGLGMGVNALRHCRRRKART 279
            |     ::..|....|.......|..|..|..   ..||                 ....::|||
Mouse   153 GKQIFPWMKESRQNTKQKTSGSSSGESCAGDK---SPPG-----------------QASSKRART 197

  Fly   280 VFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKKQLRRRDNANEPVD 344
            .::..||..|||.|...|||..|.|||:|..|.|:|.|:|.||||||||:||             
Mouse   198 AYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKK------------- 249

  Fly   345 FSRSEPGKQPGEATSSSGDSKHGKLNPGSVGG-----------TPTQPTS 383
               .:.||  |..|||.|.|......|...||           .|.:|.|
Mouse   250 ---DQKGK--GMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQS 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 30/55 (55%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 24/140 (17%)
Antp-type hexapeptide 156..161 0/4 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 8/53 (15%)
COG5576 <182..309 CDD:227863 49/151 (32%)
Homeodomain 193..249 CDD:459649 30/55 (55%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 16/65 (25%)
DUF4074 378..441 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443
Blue background indicates that the domain is not in the aligned region.

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