DRSC/TRiP Functional Genomics Resources

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Protein Alignment bsh and Msx3

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:NP_446164.1 Gene:Msx3 / 114504 RGDID:620932 Length:204 Species:Rattus norvegicus


Alignment Length:115 Identity:43/115 - (37%)
Similarity:61/115 - (53%) Gaps:12/115 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 RHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGLSETQVKTWFQNRRMKHKK--- 331
            :|...||.||.|:..||..||::|..::|||..||.|.:::|.|:|||||.||||||.|.|:   
  Rat    83 KHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE 147

  Fly   332 ----QLRRRDNANEPVDFSRSEP-GKQPGEATSSSGDSKHGKLNPGSVGG 376
                :|:.......|..|:...| |.|...:.::.|    |...||.:.|
  Rat   148 AELEKLKLTAKPLLPAAFALPFPLGTQLHSSAATFG----GNAVPGILAG 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 30/55 (55%)
Msx3NP_446164.1 Homeodomain 88..144 CDD:459649 30/55 (55%)

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