DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bsh and CDX2

DIOPT Version :10

Sequence 1:NP_477350.2 Gene:bsh / 35266 FlyBaseID:FBgn0000529 Length:429 Species:Drosophila melanogaster
Sequence 2:XP_011533177.1 Gene:CDX2 / 1045 HGNCID:1806 Length:321 Species:Homo sapiens


Alignment Length:414 Identity:102/414 - (24%)
Similarity:127/414 - (30%) Gaps:189/414 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 HSKAAAMASATTMLTTKTPFSIEHILFQNLNSASNNNNS----------SDTNGIAANTNNYAPK 79
            |..|||.|:|                  ||:||.:...|          .|.||       ||| 
Human    44 HVAAAAAAAA------------------NLDSAQSPGPSWPAAYGAPLREDWNG-------YAP- 82

  Fly    80 SSRNAVKSARSAFAH-----------------DNNPHKHPSQHSHPPQSHPPASASASATATARS 127
               ....:|.:|.||                 |.:||.||  |.||   |.||:|.:.|      
Human    83 ---GGAAAAANAVAHGLNGGSPAAAMGYSSPADYHPHHHP--HHHP---HHPAAAPSCA------ 133

  Fly   128 NQAASGYAGEDYGKSMHSTPRSNHHSRHGTSHYNGDQISQQLGSGAAQHPPVPTTQPQPPPP--- 189
                                                       ||..|     |..|.||.|   
Human   134 -------------------------------------------SGLLQ-----TLNPGPPGPAAT 150

  Fly   190 ---PPLNGGSGASNGVLYPNAPYTDHGFLQMTLG---YLSPSSGTYKSVDPYFLSQASLFGGAPF 248
               ..|:.|....|...:...|      .|.:||   ..||||                      
Human   151 AAAEQLSPGGQRRNLCEWMRKP------AQQSLGSQALTSPSS---------------------- 187

  Fly   249 FGAPGCVPELALGLGMGVNALRHCRRRKARTVFSDPQLSGLEKRFEGQRYLSTPERVELATALGL 313
                               .::...:.|.|.|::|.|...|||.|...||::...:.|||..|||
Human   188 -------------------TVKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELAATLGL 233

  Fly   314 SETQVKTWFQNRRMKHKK------QLRRRDNANEPVDFSRSEPGKQPGEATS-----SSGDSKHG 367
            ||.|||.||||||.|.:|      |.:::....:|.......|..|||...|     |...|...
Human   234 SERQVKIWFQNRRAKERKINKKKLQQQQQQQPPQPPPPPPQPPQPQPGPLRSVPEPLSPVSSLQA 298

  Fly   368 KLNPGSVGGT--PT----QPTSEQ 385
            .: ||||.|.  ||    .||..|
Human   299 SV-PGSVPGVLGPTGGVLNPTVTQ 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bshNP_477350.2 Homeodomain 275..331 CDD:459649 29/55 (53%)
CDX2XP_011533177.1 Caudal_act 13..179 CDD:461413 48/228 (21%)
Homeodomain 196..251 CDD:459649 29/54 (54%)

Return to query results.
Submit another query.