DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nf-YB and Fam47a

DIOPT Version :9

Sequence 1:NP_001286089.1 Gene:Nf-YB / 35261 FlyBaseID:FBgn0032816 Length:156 Species:Drosophila melanogaster
Sequence 2:XP_002730289.1 Gene:Fam47a / 100362696 RGDID:2324262 Length:431 Species:Rattus norvegicus


Alignment Length:155 Identity:38/155 - (24%)
Similarity:65/155 - (41%) Gaps:36/155 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 MLVKE--EDEASGDDSDKQDGGIMLR-EQDRFLPICNIIKIMKVPVPQNGKIAKDARECIQECVS 75
            :.|||  :|...|....|   |:::| .::.|||      .:...|.:..|.:|..| |  :.|:
  Rat    57 VFVKEGLDDFRKGCPPSK---GMIIRGPKEGFLP------TITHQVHRGSKKSKQKR-C--QDVN 109

  Fly    76 EFISFISSEAIERSVAENRKTVNGDDLLVAF--------SNLGF-DNYVEPLSIYLQKYRE---- 127
            .|.|...::...:|..| :...|.....:||        |::.| :|.:|.|... ||..|    
  Rat   110 LFSSLSLAQQARKSFVE-KTEANLTQHPLAFWPLEEGVPSDIDFLENVLEALDTD-QKLEEKLNQ 172

  Fly   128 ---SNKSDRNLFLDA---SYPHNED 146
               |.||.:::.|.:   .||..::
  Rat   173 CEVSRKSIQSVHLPSVAEDYPEKQE 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nf-YBNP_001286089.1 CBFD_NFYB_HMF 42..105 CDD:279185 14/62 (23%)
Fam47aXP_002730289.1 FAM47 1..210 CDD:291315 38/155 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342104
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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