DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and PTP3

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_010998.2 Gene:PTP3 / 856807 SGDID:S000000877 Length:928 Species:Saccharomyces cerevisiae


Alignment Length:890 Identity:179/890 - (20%)
Similarity:299/890 - (33%) Gaps:330/890 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly  1051 VEDLDDWQTKTVGLTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDVPLNLRAHD 1115
            :|.|.|         |...|:::..|.::|.:|          ::..:.|.:     |..|....
Yeast   107 IETLPD---------EKVLLLDVRPFTEHAKSI----------ITNSIHVCL-----PSTLLRRK 147

  Fly  1116 VSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQTQI----------------------- 1157
            ..|.|..|....|...:.:..|::.|.:::.:.....:||:.                       
Yeast   148 NFTFSKLLDNLTPSEQSVLKSKLAIDNLRIIIYDSTANQTESSVSLPCYGIASKLIEFDTNVKKT 212

  Fly  1158 -------VPKREIILKHYVKTHTINE--LSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQP 1213
                   .|:.:|:...::.|:|.|.  :|.....:...:.:.|.::..|  .:|.||.:::||.
Yeast   213 VSILMCGFPQFKILFPDHINTNTFNSDCISSAEPKSPKTNLMNSLHNTAP--HMTATTPLSSPQM 275

  Fly  1214 MVK---PD--------FYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDKSNLHKIPDQFLTD 1267
            .:|   ||        |....:...:|...|.:|.  .|||..:...:|..::|:::: .:|..:
Yeast   276 NLKLKVPDDSRSDHSNFSSSPSPRNVLSDSPMSSS--SPISALFKFQLPAPQTNINQM-FKFSQN 337

  Fly  1268 DLLPGRNKPERPNAPYIAA-----------------------KFPQRSIPFTFHLGSGDDYHNFT 1309
            :.:.|..       .|::|                       :||:..          :.....|
Yeast   338 EEIMGLE-------TYLSAVNIKEEHERWYNNDSAKKSLQNFQFPKNQ----------NSLEKDT 385

  Fly  1310 NR-KLEREKRY----RIFVRAVVDT--PQ--KHLYTSSP----FSEFLSLDMREAPPGERPHRPD 1361
            |: ||..:.||    :.:.:.|:|:  |:  :|| .|.|    .|:|..||..|.   .|.:.  
Yeast   386 NKDKLGFQIRYENLSKNYEKEVIDSVIPEWFQHL-MSIPKIELVSQFQKLDFLEK---RRLNH-- 444

  Fly  1362 PNWPAEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMA 1426
                     ||:..|.|            ::||:             .:|...|:|...|     
Yeast   445 ---------SVSFRKKE------------NSFIL-------------EKPSSYPEQLTST----- 470

  Fly  1427 ADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQ--EYE---SIEP 1486
                                 :...|..|..|   ..|.::: :|:....|:|  :|:   |:|.
Yeast   471 ---------------------SSSTIMPPKFP---DVNKVQK-RSHSQPIFTQYSKYKSMLSLES 510

  Fly  1487 GQQFTWD----NSNLEHNKSKNRYANVTAYDHSRVQL--------------PAVEGVVGSDYINA 1533
            ......|    :|.:|.. :||||.::..|:||||.|              ...:|.:..:||||
Yeast   511 DSDSESDDVIISSGVELG-AKNRYKDIFPYEHSRVILKKGLQSSKGIKHSHSTSDGGILDNYINA 574

  Fly  1534 NYCDGYR---KHNA-------------YVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTR 1582
            ||....|   :.|:             |:|||.|:..|..||:..........::.:|...|...
Yeast   575 NYLSLPRFSVEQNSSFQTTTTTTRRVRYIATQAPMPSTVHDFYTCILNNGVPLVLSLTNDFENGI 639

  Fly  1583 IKCDQYWPTRGTETYGQIFVTITE------------------TQELATYS--------------- 1614
            .||.:||.   ...|..|.|.:.|                  ||..:.||               
Yeast   640 EKCYRYWQ---EGNYNGIHVKLLEKKILKMPSTTSMRKNTMGTQNSSLYSAGVQGNSSNYSTDND 701

  Fly  1615 ----------------------------------IRTFQLCRQGFNDRREIKQLQFTAWPDHGVP 1645
                                              ||...|.........|:.|:|...|||.|..
Yeast   702 NDNDNNNNNNNNSNIAVTAAACDDDDDDDDDAILIRKILLTYHDQEKPYELLQIQVKNWPDLGTL 766

  Fly  1646 DHPAPFLQFLR---------RCRALTPPESGP-VIVHCSAGVGRTGCYIVIDS------MLERMK 1694
            .:|...||.:.         ..|.....:..| ::||||||.||||....|||      |.|.::
Yeast   767 LNPISILQAINVKNHIIDTLFARNYYQNDQLPTILVHCSAGCGRTGTLCTIDSILSNFEMFEMLQ 831

  Fly  1695 HE--------KIID-IYGHVTCLRAQRNYMVQTEDQYIFIHDAIL 1730
            .|        |:.| |...:...|.||..|||..:|:|||:|.:|
Yeast   832 KEFVKLKYPAKLFDPISWTINIFRKQRISMVQNINQFIFIYDCLL 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628 45/260 (17%)
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 88/355 (25%)
R-PTP-LAR-2 1784..2021 CDD:350402
PTP3NP_010998.2 DSP_MapKP 97..231 CDD:238723 21/147 (14%)
PTP_fungal 571..873 CDD:350509 74/304 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.