DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and PTP3

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_010998.2 Gene:PTP3 / 856807 SGDID:S000000877 Length:928 Species:Saccharomyces cerevisiae


Alignment Length:890 Identity:179/890 - (20%)
Similarity:299/890 - (33%) Gaps:330/890 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly  1051 VEDLDDWQTKTVGLTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDVPLNLRAHD 1115
            :|.|.|         |...|:::..|.::|.:|          ::..:.|.:     |..|....
Yeast   107 IETLPD---------EKVLLLDVRPFTEHAKSI----------ITNSIHVCL-----PSTLLRRK 147

  Fly  1116 VSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQTQI----------------------- 1157
            ..|.|..|....|...:.:..|::.|.:::.:.....:||:.                       
Yeast   148 NFTFSKLLDNLTPSEQSVLKSKLAIDNLRIIIYDSTANQTESSVSLPCYGIASKLIEFDTNVKKT 212

  Fly  1158 -------VPKREIILKHYVKTHTINE--LSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQP 1213
                   .|:.:|:...::.|:|.|.  :|.....:...:.:.|.::..|  .:|.||.:::||.
Yeast   213 VSILMCGFPQFKILFPDHINTNTFNSDCISSAEPKSPKTNLMNSLHNTAP--HMTATTPLSSPQM 275

  Fly  1214 MVK---PD--------FYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDKSNLHKIPDQFLTD 1267
            .:|   ||        |....:...:|...|.:|.  .|||..:...:|..::|:::: .:|..:
Yeast   276 NLKLKVPDDSRSDHSNFSSSPSPRNVLSDSPMSSS--SPISALFKFQLPAPQTNINQM-FKFSQN 337

  Fly  1268 DLLPGRNKPERPNAPYIAA-----------------------KFPQRSIPFTFHLGSGDDYHNFT 1309
            :.:.|..       .|::|                       :||:..          :.....|
Yeast   338 EEIMGLE-------TYLSAVNIKEEHERWYNNDSAKKSLQNFQFPKNQ----------NSLEKDT 385

  Fly  1310 NR-KLEREKRY----RIFVRAVVDT--PQ--KHLYTSSP----FSEFLSLDMREAPPGERPHRPD 1361
            |: ||..:.||    :.:.:.|:|:  |:  :|| .|.|    .|:|..||..|.   .|.:.  
Yeast   386 NKDKLGFQIRYENLSKNYEKEVIDSVIPEWFQHL-MSIPKIELVSQFQKLDFLEK---RRLNH-- 444

  Fly  1362 PNWPAEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMA 1426
                     ||:..|.|            ::||:             .:|...|:|...|     
Yeast   445 ---------SVSFRKKE------------NSFIL-------------EKPSSYPEQLTST----- 470

  Fly  1427 ADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQ--EYE---SIEP 1486
                                 :...|..|..|   ..|.::: :|:....|:|  :|:   |:|.
Yeast   471 ---------------------SSSTIMPPKFP---DVNKVQK-RSHSQPIFTQYSKYKSMLSLES 510

  Fly  1487 GQQFTWD----NSNLEHNKSKNRYANVTAYDHSRVQL--------------PAVEGVVGSDYINA 1533
            ......|    :|.:|.. :||||.::..|:||||.|              ...:|.:..:||||
Yeast   511 DSDSESDDVIISSGVELG-AKNRYKDIFPYEHSRVILKKGLQSSKGIKHSHSTSDGGILDNYINA 574

  Fly  1534 NYCDGYR---KHNA-------------YVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTR 1582
            ||....|   :.|:             |:|||.|:..|..||:..........::.:|...|...
Yeast   575 NYLSLPRFSVEQNSSFQTTTTTTRRVRYIATQAPMPSTVHDFYTCILNNGVPLVLSLTNDFENGI 639

  Fly  1583 IKCDQYWPTRGTETYGQIFVTITE------------------TQELATYS--------------- 1614
            .||.:||.   ...|..|.|.:.|                  ||..:.||               
Yeast   640 EKCYRYWQ---EGNYNGIHVKLLEKKILKMPSTTSMRKNTMGTQNSSLYSAGVQGNSSNYSTDND 701

  Fly  1615 ----------------------------------IRTFQLCRQGFNDRREIKQLQFTAWPDHGVP 1645
                                              ||...|.........|:.|:|...|||.|..
Yeast   702 NDNDNNNNNNNNSNIAVTAAACDDDDDDDDDAILIRKILLTYHDQEKPYELLQIQVKNWPDLGTL 766

  Fly  1646 DHPAPFLQFLR---------RCRALTPPESGP-VIVHCSAGVGRTGCYIVIDS------MLERMK 1694
            .:|...||.:.         ..|.....:..| ::||||||.||||....|||      |.|.::
Yeast   767 LNPISILQAINVKNHIIDTLFARNYYQNDQLPTILVHCSAGCGRTGTLCTIDSILSNFEMFEMLQ 831

  Fly  1695 HE--------KIID-IYGHVTCLRAQRNYMVQTEDQYIFIHDAIL 1730
            .|        |:.| |...:...|.||..|||..:|:|||:|.:|
Yeast   832 KEFVKLKYPAKLFDPISWTINIFRKQRISMVQNINQFIFIYDCLL 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020 8/49 (16%)
fn3 1106..1198 CDD:278470 17/123 (14%)
PTPc 1476..1731 CDD:214550 95/386 (25%)
PTPc 1503..1731 CDD:238006 87/350 (25%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
PTP3NP_010998.2 DSP_MapKP 97..231 CDD:238723 21/147 (14%)
PTP_fungal 571..873 CDD:350509 74/304 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.