DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and PTP2

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_014851.3 Gene:PTP2 / 854383 SGDID:S000005734 Length:750 Species:Saccharomyces cerevisiae


Alignment Length:825 Identity:169/825 - (20%)
Similarity:274/825 - (33%) Gaps:270/825 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1083 IAARFKNG----------LGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTPVNYK 1137
            ||.:::||          ...:|||..:::.....|..:..:...|                   
Yeast     4 IAQQYRNGKRDNNGNRMASSAISEKGHIQVNQTRTPGQMPVYRGET------------------- 49

  Fly  1138 ISFDAMKVFVDSQGFSQTQIVPKREI----ILKHYVKTHTINELSPFTTYNVNVSAIPSDYSYRP 1198
                     ::.....|.||.|.:::    |.::....|:...|       :::.|.|:..|:..
Yeast    50 ---------INLSNLPQNQIKPCKDLDDVNIRRNNSNRHSKILL-------LDLCAGPNTNSFLG 98

  Fly  1199 PTKITVTTQMAAPQP--MVKP--------------------DFYGVVNGEEILVILPQASEEYGP 1241
            .|.....|.::.|.|  :||.                    :|..::...:|.:.....|.....
Yeast    99 NTNAKDITVLSLPLPSTLVKRSNYPFENLLKNYLGSDEKYIEFTKIIKDYDIFIFSDSFSRISSC 163

  Fly  1242 ISHYYLVVVPEDKSNLHKIPDQFLTDDLLPGRNKPERPNAPYIAAK-----FPQRSIPFTFHLGS 1301
            :...:.::....|...|..|..:|...||.|.....:  ||.:...     .|:..:....:|.|
Yeast   164 LKTTFCLIEKFKKFICHFFPSPYLKFFLLEGSLNDSK--APSLGKNKKNCILPKLDLNLNVNLTS 226

  Fly  1302 GDDYHNFTNRKLEREKRYRIFVRAVVDTPQKHL--YTSSPFSEFLSLDMREAPPGERPHRPD--- 1361
            ....:...|.....:.. :||::::    :|.|  |:.:...:|...:|   |....|:  |   
Yeast   227 RSTLNLRINIPPPNDSN-KIFLQSL----KKDLIHYSPNSLQKFFQFNM---PADLAPN--DTIL 281

  Fly  1362 PNWPAEPEVSVNRNKDEPEILWVVLPLMVSTFIV----STALIVLCVVKRRRQPCKTPDQAAVTR 1422
            |||.....|..|..        |:|..:.:.|..    ....:..| :|.:::|......:...|
Yeast   282 PNWLKFCSVKENEK--------VILKKLFNNFETLENFEMQRLEKC-LKFKKKPLHQKQLSQKQR 337

  Fly  1423 PLMAADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSN--DNQKFS------- 1478
                     ||..:|...:..|.              |....:...||||  .|||..       
Yeast   338 ---------GPQSTDDSKLYSLT--------------SLQRQYKSSLKSNIQKNQKLKLIIPKNN 379

  Fly  1479 ------------------QEYESIEPGQQFTWDNSNLEHNKSKNRYANVTAYDHSRVQL------ 1519
                              .:||..|..|.||           ||||:|:..|:||||:|      
Yeast   380 TSSSPSPLSSDDTIMSPINDYELTEGIQSFT-----------KNRYSNILPYEHSRVKLPHSPKP 433

  Fly  1520 PAV-----------------------EGVVGSDYINANY--CDGYRKHNAYVATQGPLQETFVDF 1559
            |||                       .....:|||||||  .........|:|||.||..|..||
Yeast   434 PAVSEASTTETKTDKSYPMCPVDAKNHSCKPNDYINANYLKLTQINPDFKYIATQAPLPSTMDDF 498

  Fly  1560 WRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQE----LATYSIRTFQL 1620
            |::....|...|:.:...:|....|.|.||   ...:|....:.:..|.|    :....:|.||:
Yeast   499 WKVITLNKVKVIISLNSDDELNLRKWDIYW---NNLSYSNHTIKLQNTWENICNINGCVLRVFQV 560

  Fly  1621 CR---QGFNDRRE---------------------IKQLQFTAWPD------------HGVPD--- 1646
            .:   |..|..::                     :.|||:..|.|            |.|.:   
Yeast   561 KKTAPQNDNISQDCDLPHNGDLTSITMAVSEPFIVYQLQYKNWLDSCGVDMNDIIKLHKVKNSLL 625

  Fly  1647 -HPAPFLQFLRR--CRA-----------LTPPESGPVIVHCSAGVGRTGCYIVIDSMLERM---- 1693
             :|..|:..|.:  |:.           |....|.|::||||||.||||.::.:|.:|..:    
Yeast   626 FNPQSFITSLEKDVCKPDLIDDNNSELHLDTANSSPLLVHCSAGCGRTGVFVTLDFLLSILSPTT 690

  Fly  1694 KHEKIIDIYGH--------VTCLRAQRNYMVQTEDQYIFIHDAIL 1730
            .|...||::..        |..||.||..|||...|||..::|:|
Yeast   691 NHSNKIDVWNMTQDLIFIIVNELRKQRISMVQNLTQYIACYEALL 735

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628 32/221 (14%)
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 88/333 (26%)
R-PTP-LAR-2 1784..2021 CDD:350402
PTP2NP_014851.3 PTP_fungal 467..732 CDD:350509 71/267 (27%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.