DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Il31ra

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001244207.1 Gene:Il31ra / 688622 RGDID:1586478 Length:718 Species:Rattus norvegicus


Alignment Length:767 Identity:160/767 - (20%)
Similarity:254/767 - (33%) Gaps:207/767 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 LPTAPTDVQISEVTATSVRLEWS-YKGPEDLQYYV---IQYKPKNANQAFSEISGIITMYYVVRA 381
            ||..|.::........::...|| .|...|..|.|   ..|...:.....:|.|.....|..:..
  Rat    20 LPPKPENISCIFYFDRNLTCTWSPEKETNDTSYTVRMTYSYGKSSCTVNATEASCSFPSYCAIAP 84

  Fly   382 LSPYTEYEFYVIAVNNIGRGPPSAPATCTTGDFSFGGTKMESAPRNVQVRTLSSSTMVITWEPPE 446
            .:...|.|    |.||.|:    |.:..|..|.| ...|.| .|..:.|..:|:....|.|||.|
  Rat    85 DNCSVEVE----AQNNDGK----AISAITYWDLS-SIVKTE-PPIILSVNPISNRMFQIRWEPWE 139

  Fly   447 T----PNGQVTGYKVYYTTNSNQPEASWNSQMVDNSE----LTTVSELTPHAIYTVRVQAYTSMG 503
            .    |   :|....:.|.||:.    |....:::.|    ||.:...|.: :..:|.:...|..
  Rat   140 KIHVFP---LTCMIQFRTVNSSH----WTEVNLEDCERVFNLTGLQAFTQY-VLALRFRFSDSRY 196

  Fly   504 AGPMSTPVQVKAQQGVPSQPSNFR---ATDI-GETAVTLQWTKP--------------THSSENI 550
            ....|........:.||.....:|   ..|: |:..|.|.|.|.              .:|:||.
  Rat   197 WSKWSKEETRMTMEEVPHVLDLWRILEPADVNGDRKVLLLWKKARGAPVLEKTFGYNIQYSAENS 261

  Fly   551 V-----------HYELY------------WNDTYANQAHHKRISNSEAYT---LDGLYPDTLYYI 589
            .           ||||.            :|....:|....||.::...|   ::|:..    ||
  Rat   262 TNVTEINSITTQHYELLLLGQTHCVSVTSFNSLGKSQEAILRIPDAHEETFQCINGMQA----YI 322

  Fly   590 WLAARSQRGEGATTPPIPVRTKQYGAPPRNITAIATSSTTISLSWLPPPVERSNGRIIYYKVFFV 654
                         ..|:.|...|...|         ...|..:.|:|...|.....:.:      
  Rat   323 -------------AEPLLVVNWQSSIP---------EVDTWIVEWIPETAESKFPALCW------ 359

  Fly   655 EVGREDDEATTMTLNMTSIVLDELKRWTEYKIWV--LAGTSVGDGPRSHPIILRTQEDVPGDPQD 717
                   |:.:...|.| |..|:|:.:|.|.|.|  :.|..||:   .:.|....:|..|....:
  Rat   360 -------ESVSRVTNWT-IEQDKLEPFTCYNISVYPVLGHHVGE---PYSIQAYAKEKAPTSGPN 413

  Fly   718 VKATPLNSTSIHVSWKPPLEKDRNGIIRGYHIHAQELRDEGKGFLNEPFKFDVVDTLEFNVTGLQ 782
            .....:...:..|:||...:..|||.|..|.|..|.   ||...|::...   ..||::::..|.
  Rat   414 TTVNNIGLKTAVVTWKEIPKSIRNGFIHNYTIFYQA---EGGKKLSKTVN---SHTLQYDLESLT 472

  Fly   783 PDTKYSIQVAALTRKGDGDRSAAIVVKTP---------------GGVPVRPTVSLKIMEREPIVS 832
            ..|.|::.|.|.||.| |...::|..||.               ||:.:....::....|:|...
  Rat   473 RRTSYTVSVMASTRAG-GTIGSSINFKTSSISVFEIVLLTTLIGGGLLLLSIKTVTFGLRKPNSR 536

  Fly   833 IE----LEWERPAQT-----YGELRGYRLRWGVK---------DQALKEEMLSGPQMTKKRFDNL 879
            :.    .:...||::     :|:  .::.:..:|         ||.||...:.. .:|.|...|.
  Rat   537 LTHLCCPDVPNPAESSLATWFGD--DFKKKSNMKETENSGNTEDQVLKPCPVPA-DLTDKLVVNF 598

  Fly   880 ERGVEYEFRVAGSNHIGIGQETV--------------------KIFQTP------------EGTP 912
            |..:|    |..:...|.|||:|                    |.|:.|            ..||
  Rat   599 ENFLE----VVSTAEAGKGQESVLGGEANEYVTSPSRADCPPGKSFKEPSVLTEAASEDCHSRTP 659

  Fly   913 GGPPSNITIRFQTPDVLCVT--WDPPTREH------RNGIITRYDVQFHKKI 956
            |......:.....|...|.:  .:||..|.      :|.:.|| :...|:.|
  Rat   660 GMAEETYSELDNQPLPSCQSPGLEPPCEERAQNPYLKNSVTTR-EFLMHENI 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470 17/83 (20%)
FN3 423..514 CDD:238020 21/98 (21%)
FN3 520..610 CDD:238020 25/133 (19%)
FN3 616..707 CDD:238020 19/92 (21%)
FN3 712..810 CDD:238020 26/97 (27%)
FN3 832..907 CDD:238020 21/112 (19%)
FN3 914..1005 CDD:238020 10/51 (20%)
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
Il31raNP_001244207.1 FN3 116..205 CDD:238020 22/97 (23%)
FN3 408..488 CDD:214495 23/85 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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