DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and PTPRA

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001372231.1 Gene:PTPRA / 5786 HGNCID:9664 Length:813 Species:Homo sapiens


Alignment Length:678 Identity:305/678 - (44%)
Similarity:421/678 - (62%) Gaps:45/678 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly  1376 KDEPEILWVVLPLMVSTFIVSTALIVLCVVKR--------------RRQPCKTPDQAAVTRPLMA 1426
            :||..|:.|::.|  |:.:|...:|::..:.|              |....:|.|....:.||:|
Human   158 RDETPIIAVMVAL--SSLLVIVFIIIVLYMLRFKKYKQAGSHSNSFRLSNGRTEDVEPQSVPLLA 220

  Fly  1427 ADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQ-QF 1490
                     ..|...|:          :||:|:.:....|.|..::||:.|.:|:.::.... |.
Human   221 ---------RSPSTNRK----------YPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQA 266

  Fly  1491 TWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQET 1555
            |.:.::.|.||.||||.|:..||||||.|..||||..||||||::.:||::.|.::|.|||.:||
Human   267 TCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEET 331

  Fly  1556 FVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQL 1620
            ..|||||.||..||||||:|.|:||...||.||||.:|..|||.|.|::.:...|..|::|.|  
Human   332 VNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSVEDVTVLVDYTVRKF-- 394

  Fly  1621 CRQGFND------RREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGR 1679
            |.|...|      :|.|.|..||:|||.|||..|...|:||::.:|..|..:|.::|||||||||
Human   395 CIQQVGDMTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGR 459

  Fly  1680 TGCYIVIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARN 1744
            ||.::|||:||:.|..|:.:|:||.|:.:||||..||||:.||:||:.|:||..:.|.||:...:
Human   460 TGTFVVIDAMLDMMHTERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGDTELEVTS 524

  Fly  1745 LHTHLQKLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLT 1809
            |.|||||:....||.:.:|:|.|||||:::|:.:.|..|.|||.|..|||::.|:|||.:||.:.
Human   525 LETHLQKIYNKIPGTSNNGLEEEFKKLTSIKIQNDKMRTGNLPANMKKNRVLQIIPYEFNRVIIP 589

  Fly  1810 PIHGIEGSDYVNASFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKC 1874
            ...|.|.:||||||||||||.:.:|||:|||:....||||||:||..|..:||||:|:|.|:|||
Human   590 VKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKC 654

  Fly  1875 FQYWPHERSVRYQYYVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPKSGEG 1939
            .||||.:..|.|....|:...|.....|.:|:..||:.|:..||.:|||.|..|||.|:|..|:|
Human   655 AQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKG 719

  Fly  1940 FIDFIGQVHKTKEQFGQDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRP 2004
            .|..|..|.|.::|.| :.|||||||||.||:|.|..||.||||::.||:|||||||:.||.|||
Human   720 MISIIAAVQKQQQQSG-NHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRP 783

  Fly  2005 AMVQTEDQYHFCYRAALEYLGSFDNYTN 2032
            .||||.:||.|||:...||:.:|.:|.|
Human   784 HMVQTLEQYEFCYKVVQEYIDAFSDYAN 811

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 127/261 (49%)
PTPc 1503..1731 CDD:238006 120/233 (52%)
PTPc 1763..2022 CDD:214550 136/258 (53%)
PTPc 1791..2022 CDD:238006 122/230 (53%)
PTPRANP_001372231.1 R-PTPc-A-1 225..520 CDD:350469 139/306 (45%)
R-PTPc-A-2 574..801 CDD:350471 120/227 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100623
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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