DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and PTGS2

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_000954.1 Gene:PTGS2 / 5743 HGNCID:9605 Length:604 Species:Homo sapiens


Alignment Length:464 Identity:97/464 - (20%)
Similarity:156/464 - (33%) Gaps:157/464 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly  1118 THSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGF-----SQTQIVPKREIILK------HYVKT 1171
            :|:.....|.|.:...|...:.||..|......||     |..:.:.:.::.||      ||:.|
Human    15 SHTANPCCSHPCQNRGVCMSVGFDQYKCDCTRTGFYGENCSTPEFLTRIKLFLKPTPNTVHYILT 79

  Fly  1172 H------TINELSPF--------------------TTYNVNVSAIPSDYSYR---PPTKITVTTQ 1207
            |      .:|.: ||                    .|||       :||.|:   ..:.::..|:
Human    80 HFKGFWNVVNNI-PFLRNAIMSYVLTSRSHLIDSPPTYN-------ADYGYKSWEAFSNLSYYTR 136

  Fly  1208 MAAPQPMVKPDFYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDKSNLHK--IPDQFLTDDLL 1270
            ...|.|...|...||...::    ||.::|           :|  :|..|.:  |||        
Human   137 ALPPVPDDCPTPLGVKGKKQ----LPDSNE-----------IV--EKLLLRRKFIPD-------- 176

  Fly  1271 PGRNKPERPN------APYIAAKF----PQRSIPFTFHLGSGDDYHNFTNRKLEREKRYRIFVRA 1325
                 |:..|      |.:...:|    .:|...||..||.|.|.::.....|.|:::.|:|   
Human   177 -----PQGSNMMFAFFAQHFTHQFFKTDHKRGPAFTNGLGHGVDLNHIYGETLARQRKLRLF--- 233

  Fly  1326 VVDTPQKHLYTSSPFSEFLSLDMREAPPGERPHRPDPNWPAEPEVSVN-RNKDEPEILWVVLPLM 1389
             .|...|          :..:|....||..:..:.:..:|  |:|..: |.....|:..:|..||
Human   234 -KDGKMK----------YQIIDGEMYPPTVKDTQAEMIYP--PQVPEHLRFAVGQEVFGLVPGLM 285

  Fly  1390 VSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMAADLGAGPT-------------------P 1435
            :...|.......:|.|.::..|....:|...|..|:.    .|.|                   .
Human   286 MYATIWLREHNRVCDVLKQEHPEWGDEQLFQTSRLIL----IGETIKIVIEDYVQHLSGYHFKLK 346

  Fly  1436 SDPVDMRRLNFQTPGMIS---------HPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQQFT 1491
            .||..:....||....|:         ||.:| ..|..|        :||::.        |||.
Human   347 FDPELLFNKQFQYQNRIAAEFNTLYHWHPLLP-DTFQIH--------DQKYNY--------QQFI 394

  Fly  1492 WDNS-NLEH 1499
            ::|| .|||
Human   395 YNNSILLEH 403

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470 25/119 (21%)
PTPc 1476..1731 CDD:214550 9/25 (36%)
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
PTGS2NP_000954.1 EGF_CA 19..54 CDD:238011 8/34 (24%)
prostaglandin_endoperoxide_synthase 75..562 CDD:188648 85/404 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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