DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and ptpn18

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_068079039.1 Gene:ptpn18 / 541324 ZFINID:ZDB-GENE-050320-12 Length:514 Species:Danio rerio


Alignment Length:415 Identity:119/415 - (28%)
Similarity:182/415 - (43%) Gaps:76/415 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly  1462 FANHIERLKSND---NQKFSQEYE-------SIEPGQQFTWDNSNLEHNKSKNRYANVTAYDHSR 1516
            |...:..|.::|   :|..|.|:.       |::.....|.:...::.|..||||.::..||.:|
Zfish     9 FVKRVNCLSNHDRSGDQLISSEFSLIRKKTASLKEDYGLTTNAGGMKENVKKNRYRDILPYDQTR 73

  Fly  1517 VQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERT 1581
            |.|........|||||||:..|..::..|:||||||..|.||||||.|:.....|:|..|..|..
Zfish    74 VCLTPTTSEYQSDYINANFVKGAVRNRTYIATQGPLSSTVVDFWRMIWQHNVKVIIMACREIEMG 138

  Fly  1582 RIKCDQYW-PTRGTETYGQIFV-TITETQELATYSIRTF--QLCRQGFNDRREIKQLQFTAWPDH 1642
            :.||:.|| .|..|.|.|...| |:.|::......:||.  ..|    ::.|::...|:||||||
Zfish   139 KKKCEVYWASTSDTSTLGPFTVSTLEESRPNEEVIVRTLVVNYC----DEARKVSHFQYTAWPDH 199

  Fly  1643 GVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKI---IDIYGH 1704
            |:||.|...|..:...|.....::.||::|||||.||||....:|.:.:.:..|:|   .:|...
Zfish   200 GIPDMPDGILGMMELARQKQGNQTDPVVIHCSAGCGRTGVICAVDYVNDLLLTEQIQEDFNILDL 264

  Fly  1705 VTCLRAQRNYMVQTEDQYIFIHDAI--------------------LEAIICGVTE---------V 1740
            |..||.||...|||::||.|:...:                    :.|:...:::         .
Zfish   265 VLELRRQRPSAVQTKEQYGFVFHTVAQMFQKALEMKNMNADTSLYINAVPPKISQKSASLAPARA 329

  Fly  1741 PARNLHTHLQ------------------KLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLP 1787
            ||:..:.||:                  |..:..|......:.|.|...:|.:..::..|.:.: 
Zfish   330 PAKTRNPHLKPRLSLPQSTMNDTYAVINKSKVQAPNSAPHSVTVHFYDNANSEKTNNSAVYSTV- 393

  Fly  1788 CNKHKNRLVHILPYESSRVYLTPIH 1812
              |.|.|.|..:|...|     |||
Zfish   394 --KPKTRPVSAMPLSPS-----PIH 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 92/263 (35%)
R-PTP-LAR-2 1784..2021 CDD:350402 9/29 (31%)
ptpn18XP_068079039.1 PTPc-N18 28..293 CDD:350451 95/268 (35%)
Blue background indicates that the domain is not in the aligned region.

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