DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and Ptpn13

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_038948202.1 Gene:Ptpn13 / 498331 RGDID:1563360 Length:2465 Species:Rattus norvegicus


Alignment Length:1998 Identity:402/1998 - (20%)
Similarity:652/1998 - (32%) Gaps:673/1998 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 WRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV-----------------AENG 116
            ||:. ||:|.::.:.|:.....||.       .|.:.|:...|.                 |...
  Rat   813 WRET-KKISFSKKKITLQNTSDGIK-------HAFQTDSSKACQYLLQLCSSQHKFQLQMRARQS 869

  Fly   117 VGDAVSADATLTIYEGDKTPAGFPVIT-QGPGTRVIEVGHTVLMTCKAIGNPTPN---IYWIKNQ 177
            ..||           .|...|.|..:. |....|...||..:  :..::.:.|.|   :..:..|
  Rat   870 N
QDA-----------QDLERASFRSLNLQAESVRGFNVGRAI--STGSLASSTFNKLAVRPLSVQ 921

  Fly   178 TKV--DMSNPRYSLKDGFLQIENSREEDQGK-------------YECVAENSMGTEHSKATNLYV 227
            .::  .:|...:||   :..::||.:|...|             |..:::.|:.....:..|:  
  Rat   922 AEILKRLSCSEWSL---YQPLQNSSKEKNDKASWEEKPRGMSKSYHDLSQASLCPHRKQVINM-- 981

  Fly   228 KVRRVPPTFS----RP----PETISEVMLG----------SNLNLS-----------------CI 257
              ..:|..|:    :|    ..:.:|.:.|          ::||.|                 ..
  Rat   982 --ESLPQAFAELVGKPLYPMARSDTESLAGLPQLNNSKSVASLNRSPERRSHESDSSVEDPGQAY 1044

  Fly   258 AVGSPMP-----------------HVKWMKGSEDLTPENEMPIGRNVLQLINIQE----SANYTC 301
            .||..:|                 |.:|...|   :||.|       :.|:|:::    ...:..
  Rat  1045 VVGMSLPSSGKSSSQVPFKDNDSLHKRWSTVS---SPERE-------ITLVNLKKDLKHGLGFQI 1099

  Fly   302 IAASTLGQIDSVSVVKVQSLPTAPTDVQISEVTATSVRLEWSYKGPEDLQYYVIQYKPKNANQAF 366
            :....:|::|              ..|.||.||.         .||.||...:   ||.:.    
  Rat  1100 VGGGKMGRLD--------------LGVFISAVTP---------GGPADLDGCL---KPGDR---- 1134

  Fly   367 SEISGIITMYYVVRALSPYTEYEFYVIAVNNIGRGPPSAPATCTTGDFSFGGTKMESAPRNVQVR 431
                                     :|:||::.....|..|....         :::||.:|   
  Rat  1135 -------------------------LISVNSVSLEGVSHHAAVDI---------LQNAPEDV--- 1162

  Fly   432 TLSSSTMVITWEP-------PETPNGQVTGYKVYYTTNSNQPEASWNSQMVDNSE--------LT 481
                 |:||: :|       |.||.....|.|.|    :.:|.:..:|.| |.||        |.
  Rat  1163 -----TLVIS-QPKEKPTKVPSTPVHFANGMKNY----TKKPSSMQDSAM-DPSEDQPWPRGPLR 1216

  Fly   482 TVSELTPHAIYT-VRVQAYTSMGAGPMSTPVQVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTH 545
            .|.| :|..:.: :|..:.:|..:...|..:.       .|..:.|..:.:|:..    |.:|.|
  Rat  1217 HVPE-SPFGLSSGLREGSLSSQDSRTESASLS-------QSHVNGFFTSHLGDRG----WQEPQH 1269

  Fly   546 SS------ENIVHYELYWNDTYANQAHHKRISNSEAYTLDGLYPDTLYYIWLAARSQRGEGATTP 604
            ||      ..|.  |..::|:|.:.|  :|....:...|.|.                .:.....
  Rat  1270 SSPSPPVTSKIT--EKTFSDSYRSPA--RRQGTCDVTELPGC----------------ADSDIDD 1314

  Fly   605 PIPVRTKQYGAPPRNITAIATSSTTISLSWLPPP-----------VERSNGRI------------ 646
            |....::...||.:..::...:|..:|.:..|.|           :.:::|.:            
  Rat  1315 PTYSSSQDRQAPKQEPSSPLKASDKMSFAAFPGPSPEPGDAFEVELAKTDGSLGISVTVLFDKGG 1379

  Fly   647 ---------IYYKVFFVEVGREDD---EATTMTLNMTSIVLD--------ELKRWTEYKIWVLAG 691
                     ||.|........|.|   ......|.:..:.|:        |..|.|...:.:|  
  Rat  1380 VNTSVRHGGIYVKAVIPNGAAETDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQVVHLL-- 1442

  Fly   692 TSVGDGPRSHPIILRTQEDVPGDP------QDVKATPLNSTSIHVSWKPPLEKDRNGIIRGYHIH 750
            ...|..|.|       :|..|..|      ||.:           |..|...:.:...::.|...
  Rat  1443 LEKGQSPTS-------RERDPASPRCPTPDQDAQ-----------SQAPEKMEKQTAHVKDYSFV 1489

  Fly   751 AQELRDEGKGFLNEP---FKFDVVDTLE---FNVTGLQPDTKYSIQVAALTRK---GDGDRSAAI 806
            .::...|.|.|.|..   |.|...|.|.   .|.:.::....:..|.||.:.|   ||      :
  Rat  1490 TEDNTFEVKLFKNSSGLGFSFSREDNLTPELINGSIVRVKKLFPGQPAAESGKINVGD------V 1548

  Fly   807 VVKTPGGVPVR---------------PTVSLKIMEREPIVSIELE------WERPAQTYGELRGY 850
            ::|. .|.|::               |.|||.:....|.|..|:.      ...||..:...|..
  Rat  1549 ILKV-NGAPLKGLSQQDVISALRGTAPEVSLLLCRPAPGVLPEVNTALLTPLHSPAHAFLNSRKE 1612

  Fly   851 RLR---WGVKDQALKEEM-LSG--------PQMTKKRFDNLERGVEYEFRVAGS--NHIGI---- 897
            ..:   ..|:..|..:|. |||        |...:...|:.:.|.|...|.|..  |.|.:    
  Rat  1613 HSQPSPLSVEQCASSDENGLSGQSKRQCKPPSRRESYSDHSDSGEEESVRAAAKMPNVIPLSAFA 1677

  Fly   898 -------GQETVKIFQTPEGTPGGPPSNITI----------RFQTPDVLCVTWDPPTREHRNGII 945
                   |:....:|..|...||.|.|..:.          :.:.|...|...|.|.:.     :
  Rat  1678 PEALRSQGEPASTMFYLPRKIPGKPESESSRLPHPLDVSPGQIRQPPAECAPSDSPGKH-----L 1737

  Fly   946 TRYDVQFHKKIDHGLGSERNMTLRKAVFTNLEENTEYIFRVRAYTKQGAGPFSDKLIVETERDMG 1010
            |....|.||        |.|||..|....|..|::|....:..            .:|::|:...
  Rat  1738 THLASQLHK--------EENMTALKNDLGNHLEDSELEVELLI------------TLVKSEKGSL 1782

  Fly  1011 RAPMSLQAEATSEQTAEIWWEPVTSRGKLL-GYKIFYTMTAVEDLDDWQTKTVGLTESADLVNLE 1074
            ...::..:::......::..:|....|:|. |.:    :..|.|.|     ...:|.: |.|||.
  Rat  1783 GFTVTKGSQSIGCYVHDVIQDPAKGDGRLRPGDR----LVKVNDAD-----VTNMTHT-DAVNLL 1837

  Fly  1075 KFAQYAVAIAARFKNGLGRLSE------------KVTVRIKPEDVPLNLR--------------- 1112
            :.|...|.:.      :||:.|            .:||....|::..:|.               
  Rat  1838 RAAPKTVRLV------IGRILELPRMPVFPHLLPDITVTCHGEELGFSLSGGRGSPHGVVYISDI 1896

  Fly  1113 --------------------AHDVSTHSMTL---SWSPPIRLTPVNYKISFDAMKVF-------- 1146
                                .:.||||.|||   :.:..:.|..|..|::.|...|.        
  Rat  1897 NPRSAAAVDCSLQLLDIIHYVNGVSTHGMTLEEANRALDLSLPSVVLKVTRDGCPVVPCSTRSAI 1961

  Fly  1147 -----VDSQGFS------QTQIVPKREIILKHYVKTHTINELSPFTTYN---VNVSAIPSDYSYR 1197
                 :::.|.|      |..:.||:.                 |:..|   .:.:..|......
  Rat  1962 SALRPLEANGLSSMEPYGQPALTPKKS-----------------FSKVNGDGASGAMCPGGKGLS 2009

  Fly  1198 PPTKITVTTQMAAPQPMVKPDFYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDKSNLHK--- 1259
            .|.|.:.....|......:.|     :.::.:...||.:|    :....|.||.|:..||..   
  Rat  2010 SPRKKSADLMEARDFSFQESD-----SRDDDVYDDPQEAE----VIQSLLDVVDEEAQNLLNQTK 2065

  Fly  1260 ------IPDQFLTDDLLPGRNKPERPNAPYIAAKFPQRSIPFTFHLGSGDDYHNFTNRKLEREKR 1318
                  .||...|:    |....:..:.....:..|: .:|.:.:.|.|                
  Rat  2066 ASRRACSPDPLRTN----GEASEDGEDTDCDGSPLPE-DVPESVNGGGG---------------- 2109

  Fly  1319 YRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREAPPGERPHRPDPNWPAEPEVSVNRNKDEPEILW 1383
                              .:.|:..:.....|.|..|...:.......|.....:.:||      
  Rat  2110 ------------------KACFASLIQASQEEKPVKEEATQESRESTTETTDREDSSKD------ 2150

  Fly  1384 VVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMAADLGAGPTPSDPVDMRRLNFQT 1448
               ||    |:.:..|..|.||       :.|.....|...:.|.:            |.|.   
  Rat  2151 ---PL----FLTNEELAALPVV-------RVPPSGKYTGTQLQATI------------RTLQ--- 2186

  Fly  1449 PGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQQFTWDNSNLEHNKSKNRYANVTAYD 1513
             |::.. .||..|..| ::.||..|.....|..|                 |:.||||.|:..||
  Rat  2187 -GLLDQ-GIPSKELEN-LQELKPLDQCLIGQTKE-----------------NRRKNRYKNILPYD 2231

  Fly  1514 HSRVQLPAVEGVVGSDYINANYCD---GYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMT 1575
            .:||.|....|     ||||::..   |.::. .|:|.||||..|..|||:|.||..:..|.|||
  Rat  2232 TTRVPLGDEGG-----YINASFIRIPVGTQEF-VYIACQGPLPTTVGDFWQMVWEQNSTVIAMMT 2290

  Fly  1576 RLEERTRIKCDQYWPT-RGTETYG--QIFVTITETQELATYSIRTFQLCRQGFNDRREIKQLQFT 1637
            :..|..:|||.:|||: .||.|..  ::.:.:...|:|..:.:|...|......:.|.|..|.||
  Rat  2291 QEVEGEKIKCQRYWPSILGTTTMANERLRLALLRMQQLKGFVVRVMALEDIQTGEVRHISHLNFT 2355

  Fly  1638 AWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIIDIY 1702
            |||||..|.||...|.|:...|.:.  .|||||.|||||:||:|..|.||.:|..:..:...||.
  Rat  2356 AWPDHDTPSHPEDLLTFISYMRHIR--RSGPVITHCSAGIGRSGTLICIDVVLGLISQDLEFDIS 2418

  Fly  1703 GHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQ 1750
            ..|.|:|.||:.|||||.||:|.:..:|..:             ||||
  Rat  2419 DLVRCMRLQRHGMVQTEGQYVFCYQVVLYVL-------------THLQ 2453

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151 14/76 (18%)
Ig strand B 53..57 CDD:409353