DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Pxt

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_650648.3 Gene:Pxt / 42131 FlyBaseID:FBgn0261987 Length:809 Species:Drosophila melanogaster


Alignment Length:810 Identity:157/810 - (19%)
Similarity:251/810 - (30%) Gaps:259/810 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1371 SVNRNK-DEPEILWVVLPLMVSTFI------VSTALIVLCVVKRRRQPCK-----TPDQAAVTRP 1423
            ||.:|: ||...|....||..||..      .::.|:..|:      ||.     .|........
  Fly    25 SVRQNRFDEVPDLQTPAPLATSTESSKKPEKATSGLLKKCL------PCSDGIRCVPQIQCPAHV 83

  Fly  1424 LMAA-------DLGAG--------------PTPSDPVDMRRLNFQT---PGMISH---------- 1454
            .|.:       ||.||              |.|......||..|.|   |.::..          
  Fly    84 RMESHEKPQICDLPAGKFGYCCETGQNHTAPKPETSPKERRSGFPTILSPAVLDEARRNFEHLMH 148

  Fly  1455 --PPIPI----SEFANHI--ERLKSNDNQKFSQEYESIE--------------PGQQFTWDNSNL 1497
              ..||:    .:||:.:  .....:|...|:....:||              |.:.|..:|..:
  Fly   149 GVAQIPVRRGFPDFAHGLVFHSTAKDDLHNFAISNSAIEQVMTTQLFGKKEQVPVEDFITNNVPI 213

  Fly  1498 EHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINAN-YCDGYRKHNAYVATQGPLQETFV---- 1557
            :..:        |...| ..|.|.|.|.:.|.|.:.: .|:......:.....|...|..:    
  Fly   214 KFTE--------TPLAH-HCQPPPVCGNIRSVYRSMDGTCNNPEPQRSLWGAAGQPMERMLPPAY 269

  Fly  1558 --DFWRMCWELKTATIVMMTRLEERTRIK-CDQYWPTRG--TETYGQIFV-TITETQELATYSIR 1616
              ..|.........|.::..|...||.:. .|:..|...  ...:||:.. .|::|..:......
  Fly   270 EDGIWTPRAHSSDGTPLLGARKISRTLLSDVDRPHPKYNLMVMQFGQVLAHDISQTSSIRLEDGS 334

  Fly  1617 TFQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRC-----RALTP-PESGPVIVHCSA 1675
            ..|.|..........:|..|...|.|..||... |..|..||     .:|.| |:          
  Fly   335 LVQCCSPEGKVALSPQQSHFACMPIHVEPDDEF-FSAFGVRCLNFVRLSLVPSPD---------- 388

  Fly  1676 GVGRTGCYIVIDSMLERMKHEKIID---IYGH----VTCLRA------------QRNYMVQTEDQ 1721
                  |.:.....|.::.|  .:|   :||.    ...|||            .|:.:..|.|:
  Fly   389 ------CQLSYGKQLTKVTH--FVDASPVYGSSDEASRSLRAFRGGRLRMMNDFGRDLLPLTNDK 445

  Fly  1722 YI---------FIH--DAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGM---------EV 1766
            ..         ..|  |.....||..:|          ||.||..|.......:         |.
  Fly   446 KACPSEEAGKSCFHSGDGRTNQIISLIT----------LQILLAREHNRVAGALHELNPSASDET 500

  Fly  1767 EFKKLSNVKMDSSKFVTAN--LPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDY---VNASF-- 1824
            .|::...:.:...:.:|.|  ||        :.|.|.:..|..|.|:|.....||   ||.:.  
  Fly   501 LFQEARRIVIAEMQHITYNEFLP--------IIIGPQQMKRFRLVPLHQGYSHDYNVNVNPAITN 557

  Fly  1825 -IDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRYQY 1888
             ..|..||..:.:..|..|        :..||.                            |...
  Fly   558 EFSGAAYRMGHSSVDGKFQ--------IRQEHG----------------------------RIDE 586

  Fly  1889 YVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQF---------QFI---DWP------------ 1929
            .|..|...:|..:.:.|||.....|...|:.::|.         :|:   |.|            
  Fly   587 VVNIPDVMFNPSRMRKREFYDDMLRTLYSQPMQQVDSSISQGLSRFLFRGDNPFGLDLAAINIQR 651

  Fly  1930 --EQGVPKSGEGFIDFIG--QVHKTKEQFGQDGPITV-HCSAGVGRSGVFITLSI--VLERMQYE 1987
              :||: :|...:::.:|  ::| :.|||    ||.: ...:.|.|:...|.|.:  :||:....
  Fly   652 GRDQGL-RSYNDYLELMGAPKLH-SFEQF----PIEIAQKLSRVYRTPDDIDLWVGGLLEKAVEG 710

  Fly  1988 GVLDVFQTVRILRSQRPAMVQTEDQYHFCY 2017
            ||:.|  |...:.:.:.|..:..|:|::.|
  Fly   711 GVVGV--TFAEIIADQFARFKQGDRYYYEY 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 57/315 (18%)
PTPc 1503..1731 CDD:238006 51/274 (19%)
PTPc 1763..2022 CDD:214550 60/303 (20%)
PTPc 1791..2022 CDD:238006 54/264 (20%)
PxtNP_650648.3 GH64-TLP-SF <67..119 CDD:295337 9/51 (18%)
An_peroxidase 237..772 CDD:281139 112/583 (19%)
peroxinectin_like 396..767 CDD:188655 81/407 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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