DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and cysu

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_650627.1 Gene:cysu / 42100 FlyBaseID:FBgn0038511 Length:753 Species:Drosophila melanogaster


Alignment Length:843 Identity:149/843 - (17%)
Similarity:245/843 - (29%) Gaps:352/843 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly  1183 YNVNV-SAIPSDYSYRPPTKITVTT------------QMAAPQPMVKPDFYGVVNGEEILVILPQ 1234
            ||||: ....:.|:..|.|.||...            .:|.|:...||:....| ||.:|.|..|
  Fly    48 YNVNLFRGTLNPYNNGPGTCITYDAINAAYLDARKRIHVAQPKSDWKPEELATV-GELLLDISIQ 111

  Fly  1235 ASEEYGPISHYY----LVVVPEDKSNLHKI-PDQFLTDDLLPGR--------NKPERP-----NA 1281
            .:..|| :|:..    |..:...|:.:.:: |..|...:..||:        |..|.|     ||
  Fly   112 LARTYG-LSYEEIEKGLPTIDTSKTLIREVCPPFFAGVECRPGKYRRFDGLCNNIEHPTWGAANA 175

  Fly  1282 PYIAAKFPQRSIPFTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQKHLYTSSPFSEFLSL 1346
            |:      ||.|...:..|......:.|.|.|                         |||..:| 
  Fly   176 PF------QRLIGPLYSDGINAPRISVTGRDL-------------------------PFSRVVS- 208

  Fly  1347 DMREAPPGERPHRPDPN------------W-------------PAEPEVSVNRNKDEPEILWVVL 1386
                     |...||..            |             |.:|   :|||  :||      
  Fly   209 ---------RTMHPDDGFHDHAGTVMVIAWGQFMDHDFTLTGTPLDP---INRN--DPE------ 253

  Fly  1387 PLMVSTFIVSTALIVLCVVKR----RRQPC---KTPDQAAVTR--PLMAADLGAG-PTPSDPVDM 1441
                          ..|  ||    :...|   :.||.....|  .:...|...| |:|.....:
  Fly   254 --------------ECC--KRPLHLKHPYCNEIRIPDDDYFYRLFNVKCIDFVRGFPSPRPGCKL 302

  Fly  1442 -RRLNFQT-PGMISHPPIPISEFANHIERLKSNDNQKFS-------------QEYESIE------ 1485
             .|..|.| .|:|.         ||.:..:|.:..:|..             |||...:      
  Fly   303 GSRQQFNTLTGVID---------ANTVYGVKESFARKLRTGYGGLMRMNPVFQEYGLKDLLPLKL 358

  Fly  1486 --PGQQFTWDNSNL-------------------------EHNKSKNRYANVTAY--------DHS 1515
              |.:..|..|.::                         |||:.....|.:..:        :..
  Fly   359 DIPDEGCTRPNKSMYCFEGGEIRVNEQLVLTCMHTLMAREHNRLATALAQINKHWDDETLFQEAR 423

  Fly  1516 RVQLPAVEGVVGSDYI-----------------NANYCDGYRKHNAYVATQGP------------ 1551
            |:.:..|:.|..::::                 ...|.|||.      :|..|            
  Fly   424 RINIAIVQHVTFNEFLPILLGKEVMEKFGLVLQKDGYWDGYD------STVNPGIIDSFAGAAFR 482

  Fly  1552 ----LQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITE------ 1606
                |..|.|:.|.     |....:...||.:..|...|.|......|.:..:...:.:      
  Fly   483 FGHSLLPTAVERWS-----KAHKFIASKRLSDLIRRPYDLYRAGVLDEYFMGLMNQVAQAMDDSI 542

  Fly  1607 TQELATYSIRTFQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIV 1671
            |||:..:..:     ::|.....::.........:.|:|.    :::|.:.|             
  Fly   543 TQEVTNHLFK-----KEGARFGMDLVSFNMQRGREFGIPG----YMEFRKFC------------- 585

  Fly  1672 HCSAGVGRTGCYIVIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICG 1736
                |:..:..:   |.|...|.:|.::. ||.                  ||.|.|.::....|
  Fly   586 ----GLPTSNTW---DEMYGSMPNETVLR-YGS------------------IFEHPADIDLWSGG 624

  Fly  1737 VTE--VPARNLHTHLQKLLITE--------------PGETISG-----MEVEFKKLSNVKMDSSK 1780
            |:|  :|...|......::.|:              |.:..|.     .|:...|||.:..|::.
  Fly   625 VSEKSLPGSMLGPTFACVIATQMSYLRRGDRFWYELPNQPSSFTPEQLQEIRKAKLSRLICDNTD 689

  Fly  1781 F---------------VTANLPCNKHKNRLVHILPYESSRVYLTPI-----HGIEGS--DYVN 1821
            .               :...:||..      .|:|    .:.||..     ||::.|  :|:|
  Fly   690 LIDTVQIYPMVLPDHEINPRVPCKS------GIIP----SIDLTKWADFGGHGVDPSLYNYIN 742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470 5/15 (33%)
PTPc 1476..1731 CDD:214550 50/347 (14%)
PTPc 1503..1731 CDD:238006 40/274 (15%)
PTPc 1763..2022 CDD:214550 16/86 (19%)
PTPc 1791..2022 CDD:238006 9/38 (24%)
cysuNP_650627.1 An_peroxidase 155..692 CDD:281139 110/672 (16%)
peroxinectin_like 305..687 CDD:188655 70/449 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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