DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and CG4009

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001262655.1 Gene:CG4009 / 42054 FlyBaseID:FBgn0038469 Length:649 Species:Drosophila melanogaster


Alignment Length:506 Identity:100/506 - (19%)
Similarity:174/506 - (34%) Gaps:191/506 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly  1232 LPQASEEYGPISHYYLVVVPEDKSNLHKIPDQFLTDDLLPGRNKPERPNAPYIAAKFPQRSIPFT 1296
            ||:.    |||:::      ..|:.||........|.:.|   |.|.|.        |::....|
  Fly   191 LPRG----GPIAYH------TGKTCLHFARSVSDADAICP---KVEEPQ--------PEKLTVAT 234

  Fly  1297 FHLGSGDDYHN--FTNRKLEREKRYRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREAPPGERPHR 1359
            .:|.....|.|  ..|||:      |:|...::.|.    ||:.                     
  Fly   235 AYLDLSSIYGNNPSQNRKV------RLFKGGLLKTS----YTNG--------------------- 268

  Fly  1360 PDPNW-PAEPEVSVNRN-----KDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQA 1418
              .:| |    ||.|.|     |.|    ..::|.:.:.|..:.||:...:|:...:        
  Fly   269 --QHWLP----VSQNENGECGAKSE----CYIVPDIRNRFSPTIALLQTLLVREHNR-------- 315

  Fly  1419 AVTRPLMAADLG-AGPTPSDP---VDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFS- 1478
                  :|.:|. ..|..||.   .:.|::|             |::|            ||.: 
  Fly   316 ------LAENLALINPDHSDERIFQEARKIN-------------IAQF------------QKITY 349

  Fly  1479 QEYESIEPGQQFTWDNSNL----------EHNKSKN--RYA--NVTAYDHSRVQLPAVEGVVGSD 1529
            .::..:..|:.:|:.|..:          :::::.|  .||  :..|:.::..|:|....:|..:
  Fly   350 YDWLPLFVGRTYTYLNGLIYPVEPTEYVNDYDETVNPAAYAEFSAAAFRYAHTQIPGWFSLVAPN 414

  Fly  1530 YINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMM--------------TRLEER 1580
                      |:.|..:..     ..|:|        :|.||.::              |:|.:|
  Fly   415 ----------RRSNRTMRL-----SDFLD--------RTETIRLLDTSDNFDALLRGLATQLHKR 456

  Fly  1581 TRIKCDQ----YWPTRGTETYGQIFVTITETQELATYSIRTFQLCRQGFNDRREIKQLQFTA-WP 1640
            :....|:    |:..:..|.||      ::.:.:.....|.|.|.  .:||.||...|:... |.
  Fly   457 SDGNIDREIKHYFNRKEFEEYG------SDLKSIDIQRARDFGLA--SYNDVREFCGLRRAVDWA 513

  Fly  1641 D--HGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSM 1689
            |  |.:|...   :..|||..| ||.:       ...|||.|..|.|.|::
  Fly   514 DFAHEIPGEK---ISLLRRLYA-TPDD-------VELGVGGTLEYHVPDAL 553

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 51/250 (20%)
PTPc 1503..1731 CDD:238006 47/212 (22%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
CG4009NP_001262655.1 An_peroxidase_like 77..>367 CDD:265428 53/276 (19%)
An_peroxidase 95..610 CDD:281139 100/506 (20%)
peroxinectin_like 228..605 CDD:188655 86/448 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.