DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and Irc

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001262653.1 Gene:Irc / 42049 FlyBaseID:FBgn0038465 Length:697 Species:Drosophila melanogaster


Alignment Length:347 Identity:70/347 - (20%)
Similarity:111/347 - (31%) Gaps:130/347 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 IRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRY------TVLEQPGGISILRI 97
            :.||.:|.:..|  |...|.:|..              ...|.|:      .:|.|||       
  Fly   223 LSKPVSQSMSNG--APIECCSRDQ--------------INLQPRHHHPACAPILYQPG------- 264

  Fly    98 EPVRAGRDDAPYEC---------VAENGVGDA-------------------VSADATLTIYEGD- 133
                 |:.|.| .|         ||:...|.|                   .:|:..|.:.||. 
  Fly   265 -----GKYDVP-SCLNYVRSALAVADCNFGGAEQLNQATGSLDLSQLYGFTAAAERKLRVLEGGL 323

  Fly   134 --KTPAG------FPVI--TQGP---GTRVIEVGHTVLMTCKAIGNPTPN-------IY--WIKN 176
              .||.|      .|:.  |:||   ....|..|     ||.|.|:...|       ||  :::|
  Fly   324 LRSTPRGEFDNALLPIATDTEGPSFCARATIGDG-----TCFAAGDSRVNSSPFSILIYTIFMRN 383

  Fly   177 QTKV----DMSNPRYSLKDGFLQIENSREEDQGKYECVAE---NSMGTEHSKATNLYVKVRRVPP 234
            ..||    ...|||:| .:...|...:...|..:...:.|   ..:|.:.|.      ::||..|
  Fly   384 HNKVAAELKQRNPRWS-DEKLFQAAKAVNVDIYRRVVIEEWLPEVLGQKMSS------EIRRKQP 441

  Fly   235 T-----------------FSRPPE-----TISEVMLGSNLNLSCIAVGSPMPHVKWMKGSEDL-T 276
            .                 ||..|.     |...|:.|:..|...:.:...:|.....:..|:: .
  Fly   442 NRALEVSNEFAVAAIRFYFSMLPNELLNLTKDNVVYGTEKNNQYVFISKELPTKNLFELKEEIYK 506

  Fly   277 PENEMPIGR--NVLQLINIQES 296
            |:.:....:  |:|:.:..||:
  Fly   507 PKLQYTSQKLNNILESLLNQET 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845 23/123 (19%)
I-set 36..129 CDD:254352 23/123 (19%)
IG_like 146..227 CDD:214653 22/99 (22%)
Ig 159..228 CDD:299845 19/84 (23%)
I-set 234..318 CDD:254352 15/88 (17%)
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216 9/51 (18%)
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
IrcNP_001262653.1 An_peroxidase 151..672 CDD:281139 70/347 (20%)
An_peroxidase_like 290..637 CDD:265428 50/251 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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