DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and CG42327

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001036706.2 Gene:CG42327 / 41401 FlyBaseID:FBgn0259227 Length:1429 Species:Drosophila melanogaster


Alignment Length:1603 Identity:317/1603 - (19%)
Similarity:504/1603 - (31%) Gaps:515/1603 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 NNIGRGPPSAPATCTTGDFSFGGTKMESAPRNVQ----VRTLSSSTMVITWEPPETPNGQVTGYK 456
            :.|||.|.:..|.          :.|.|:..|::    .:|: ..|...|..|.|..|.:.|...
  Fly    53 SGIGREPVAIKAE----------SDMFSSQTNIEDEKSAKTV-DQTETQTASPKENLNVKQTTAA 106

  Fly   457 VYYTTNSNQPEASWNSQMVD-----------------NSELTTVSEL------------------ 486
            .....:||..|:..|...||                 .|..||.|:|                  
  Fly   107 FEKNESSNTTESHLNGAQVDPVKELKDTETSADTVKEESSTTTTSQLDQNPTNVTDKKSTEAQFK 171

  Fly   487 ------------TPHAIYTVR-VQAYTSMGAGPMSTPVQVKAQQGVPSQPSNFRATDIGET---- 534
                        |...:.|.: :|.|..:    .::|::.:||..:..:.|. .||....|    
  Fly   172 DERLSKEILSTTTEQILLTEKALQKYVVI----TNSPLRGEAQPEIKDKTSK-SATSEKSTLPLK 231

  Fly   535 AVTLQWTKPTHSSENIVHYELYWNDTYANQAHHKRISNSEAYTLDGLYPDTLYYIWLAARSQRGE 599
            .||::  .|:.::|.:      :|.|....:.|.|               ::.|......|.|..
  Fly   232 PVTIE--VPSTTTEGV------FNTTTTRSSDHGR---------------SMQYSSTTEESSRSS 273

  Fly   600 GATTPPIPVRTKQYGAPPRNITAIATSSTTISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEAT 664
            .|:..|:.:......:.|.:.|:.:|...|.::|:      .||..:|.......|| |:..|..
  Fly   274 PASVTPMKLIPLPMTSTPSSTTSTSTPLPTTAVSF------ASNENVIEESTSKSEV-RQLPEKR 331

  Fly   665 TMTLNMTSIVLDELKRWTEYKIWVLAG-TSVGDGP----RSHPIILRTQEDVPGDPQDVKATPLN 724
            ...::..|....:|......::|.||| .:|...|    .|.|::..|  |:..|..    .|||
  Fly   332 AKFISENSTNAQQLTLPNTAEVWSLAGMKAVPKAPLTTTTSVPLLNHT--DLANDID----MPLN 390

  Fly   725 STSIHVSWKPPLEKDRNGIIRGYHIHAQELRDEGKGFLNEPFKFDVVDTLEFNVTGLQPDTKYSI 789
            .|.:|        |::|                            ::|.:...:..|.|:.:...
  Fly   391 KTELH--------KEKN----------------------------LLDWMNIAMLPLTPENRTEF 419

  Fly   790 QVAALTRKGDGDRSAAIVVKTPGGVPVRPTVSLKIMEREPIVSIELEWERPAQTYGELRGYRLRW 854
            .|.......:|...|.                                                 
  Fly   420 VVRTTLDATEGATQAT------------------------------------------------- 435

  Fly   855 GVKDQALKEEMLSGPQMTKKRFDNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEGT--PGGPPS 917
               .:||.||..|...:|                      :|:.|:.|...:|...|  ||....
  Fly   436 ---TEALVEETHSKSDIT----------------------VGLEQDNVTTARTMPSTPDPGSMDL 475

  Fly   918 NI---TIRFQTPDV-------------LCVTWDPPTREHRN-----------------GIITRYD 949
            |:   |:|.|..:|             |......|.||...                 ||..|.|
  Fly   476 NMTTTTVRTQQLEVPLVKKMSDAANAKLIEAVTEPQRETEAATEAATFVTLPEKLATFGITARVD 540

  Fly   950 VQFHKKIDHGLGSERNMTLRKAVFTNLE----ENTEYIFRVRAYTKQGAGPFSDKLIVETERDM- 1009
            ....:.:        |:|...|...:.|    .:|:.:..:.:.|...|.|.|.: .|..|:|| 
  Fly   541 STQTELL--------NVTTAAAATESGEMSKANSTDTLSAMTSTTTTTARPMSVE-HVTPEQDME 596

  Fly  1010 -------------------------------GRAPMSLQAEATSEQTAEIWWEPVTSRGKL--LG 1041
                                           ..|..:.:|.||||.|........|:....  :.
  Fly   597 AATSLATTAATSSGTTEAAATSSTTAATPVVSEAATAAEASATSEATTAATLSVATTAASTTEIA 661

  Fly  1042 YKIFYTMTAVEDLDDWQTKTVGLT----ESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRI 1102
            .|........:|.||.....:..|    ||..............:::.       |::.:|:..|
  Fly   662 MKATQISNIRDDNDDNSNDVIVATTKFPESEQAATTASVEPTTTSVSV-------RVAGEVSTSI 719

  Fly  1103 KPEDVPLNLRAH---DVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQTQIVPKREII 1164
            :||.:..:.|..   |.||.:.:::......:..::.:::.:|:.| ....|.|.|..:...|  
  Fly   720 RPEIIVTSTRNSTIVDTSTSATSVATPTQTEIAQISNEVNLEAVTV-KTRDGLSDTNELRTAE-- 781

  Fly  1165 LKHYVKT-HTIN-----------------ELSPFTTYNV--NVSAIPSDY---------SYRPPT 1200
                 || :.:|                 |.:|.||.::  :||.:..::         ...||.
  Fly   782 -----KTDNAVNNSVAITESDLGALATAVETNPTTTNSLLSDVSKLSKEHESSLETNNIGEAPPE 841

  Fly  1201 KIT----VTTQMAAPQPMVKPDFYGVVNGEEIL----------VILPQASEEYGPISHYYLVVVP 1251
            ..|    .|..:|..:....|   ....|:||:          |...|.:|:  .::...:.|..
  Fly   842 STTPAAPATVAVATDESTAAP---AATGGQEIVREGQHHDGQQVADEQDTEQ--QLAKTTMAVTT 901

  Fly  1252 EDKSNLHKIPDQFLTDDLLPGRNKPERPNAPYIAAKFPQRSIPFTFHLGSGDDYHNFTNRKLERE 1316
            ...|..........|....|......:|                 ..:...||....|       
  Fly   902 TTTSATTTTTSTTTTTTETPLTTTTMQP-----------------VEISLLDDSTTTT------- 942

  Fly  1317 KRYRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREA-------------PPGERPHRPDPNWPAEP 1368
                      ..||...:|..|  |...|..:|.:             .|.|.|......:|.|.
  Fly   943 ----------TTTPAPPVYFES--STVASTTIRSSTTMLPETTTASTQSPSEMPPTFMAPYPNEL 995

  Fly  1369 EVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCV---VKRRRQPCKTPDQAAVTRPLMAADLG 1430
            :......:|....:.|::.:.||...| .|||:|..   :.|:||...:..|......|.|..|.
  Fly   996 DHMQTNAQDNGTDVNVIIAITVSVIGV-VALILLVAFLYLMRKRQKQTSYGQRCRPVSLDAYSLD 1059

  Fly  1431 ----AGPTPSDPVDMR-------RLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQ----- 1479
                .|.......|||       ...|..|. :.|..:..||.|..:|| :|:..::|..     
  Fly  1060 NVSVLGSVRRKGRDMRASKRTYGNAAFDDPS-LRHNLLTASELARFVER-RSDVFEEFRDVPQII 1122

  Fly  1480 -EYESIEPGQQFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYR-KH 1542
             ..:.:.||.:            .|||||||.....:||.|........::||||||..|.| ..
  Fly  1123 ARADEVPPGCE------------DKNRYANVIPLPETRVVLQRQGDDDKTEYINANYVRGPRDAP 1175

  Fly  1543 NAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGT----ETYGQIFVT 1603
            |.|:|.|.||:.|..|||||.||.::..|:..|.|.|....:|.:|.|...|    .:||...||
  Fly  1176 NYYIACQAPLESTTSDFWRMIWEQQSRVIIQATDLSENGIERCAEYLPPSATLDNHSSYGDYQVT 1240

  Fly  1604 ITETQELATYSIRTFQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRAL------- 1661
            :...:....|:|.|..|.|....:.||:....: .||:.|||...||.:..|...|:.       
  Fly  1241 LKHREVKDRYAISTLVLKRVDGEESRELTHYWY-KWPEAGVPAEEAPIIAMLLEARSSLKSYSLE 1304

  Fly  1662 ------------------------------------------TPPESGPVIVHCSAGVGRTGCYI 1684
                                                      |..:.||:.||||.|.||||..|
  Fly  1305 QANELREKSATLETSMDADGSKAEAGSTSSHEINGNISSRSGTRSQQGPLTVHCSPGTGRTGTII 1369

  Fly  1685 VIDSMLERMKHEK-IIDIYGHVTCLRAQRNYMVQTEDQYIFIH 1726
            ..|..:..::..| .:||...|..:|..|...|||::||.||:
  Fly  1370 ASDMAIRSLETPKRSVDIPQLVYYVRRGRASAVQTKEQYEFIY 1412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020 5/14 (36%)
FN3 <382..747 CDD:442628 82/411 (20%)
FN3 712..810 CDD:238020 14/97 (14%)
FN3 832..898 CDD:214495 7/65 (11%)
FN3 <867..1269 CDD:442628 89/524 (17%)
fn3 914..998 CDD:394996 21/120 (18%)
R-PTPc-LAR-1 1498..1735 CDD:350401 87/284 (31%)
R-PTP-LAR-2 1784..2021 CDD:350402
CG42327NP_001036706.2 PTPc 1134..1415 CDD:214550 87/280 (31%)
Blue background indicates that the domain is not in the aligned region.

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