DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and zgc:77784

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_991212.1 Gene:zgc:77784 / 402947 ZFINID:ZDB-GENE-040426-1874 Length:140 Species:Danio rerio


Alignment Length:109 Identity:36/109 - (33%)
Similarity:57/109 - (52%) Gaps:6/109 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 THPTIVDAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS---RYTVL 86
            :.|.:.|:  ||.|:..|.:..|..|..|:..|.|.|.|.|::.|.|:|:.|...:.   .:.:|
Zfish    18 SRPRLEDS--PPRIVEDPSDLIVSKGEPATLNCKAEGRPAPTVQWYKDGEHVETDKDDPRSHRML 80

  Fly    87 EQPGGISILRIEPVRAGR-DDAPYECVAENGVGDAVSADATLTI 129
            ...|.:..|||...|..: |:..|.|||.|.:|:|||.:|:|.:
Zfish    81 LPSGSLFFLRIVHGRRSKPDEGVYTCVARNYLGEAVSRNASLEV 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845 34/97 (35%)
I-set 36..129 CDD:254352 33/96 (34%)
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
zgc:77784NP_991212.1 Ig1_Robo 26..125 CDD:143317 34/99 (34%)
I-set 27..124 CDD:254352 33/96 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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