DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Ptp69D

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_524048.2 Gene:Ptp69D / 39443 FlyBaseID:FBgn0014007 Length:1462 Species:Drosophila melanogaster


Alignment Length:1418 Identity:387/1418 - (27%)
Similarity:619/1418 - (43%) Gaps:293/1418 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   761 FLNEPFKFDVVDTLEFNVTGLQPDT--KYSIQVAALTRKGDGDRSAAIVVKTPGGVPV-RPTVSL 822
            :|.:..:|:.:||  |:......||  .::::...:.:|.:|.....:...|  |:.: ...::|
  Fly   171 WLKDGSQFEFLDT--FSSISKLNDTHLNFTLEFTEVYKKENGTYKCTVFDDT--GLEITSKEITL 231

  Fly   823 KIMEREPIVSIELEWERPAQTYGELRGYRLRWGVKDQ---------ALKE----------EMLSG 868
            .:|| .|.|||:.     |:..|..:.| |.|.|.|.         .|:|          :.::|
  Fly   232 FVME-VPQVSIDF-----AKAVGANKIY-LNWTVNDGNDPIQKFFITLQEAGTPTFTYHKDFING 289

  Fly   869 PQMTKKRFDNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEG---------------TPGGPPSN 918
            .. |....|:.:....|..|:.|.|.||.||.|    |.|:|               |.|...|.
  Fly   290 SH-TSYILDHFKPNTTYFLRIVGKNSIGNGQPT----QYPQGITTLSYDPIFIPKVETTGSTAST 349

  Fly   919 ITIRFQTPDVLCVTWDPPTREHRNGIITRYDVQFH-----------KKIDHGLGSERNMTLRKAV 972
            |||          .|:||..:     :..| :|::           |.|:..:..:.:..| ..:
  Fly   350 ITI----------GWNPPPPD-----LIDY-IQYYELIVSESGEVPKVIEEAIYQQNSRNL-PYM 397

  Fly   973 FTNLEENTEYIFRVRA---YTKQGAGPFSDKLIVETERDMGRAPMSLQAE-----ATSEQTAEIW 1029
            |..|:..|:|.|||||   .||. .||:|:.:...|...:...|.:|..:     .|...:..|.
  Fly   398 FDKLKTATDYEFRVRACSDLTKT-CGPWSENVNGTTMDGVATKPTNLSIQCHHDNVTRGNSIAIN 461

  Fly  1030 WE-PVTSRGKLLGYKIFY---TMTAVEDLDDWQTKTVGLTESADLVNLEKFA---QYAVAIAA-- 1085
            |: |.|..||::.|.|..   .|:.| |.:.|..|...:.|.......|..:   .|.|.::|  
  Fly   462 WDVPKTPNGKVVSYLIHLLGNPMSTV-DREMWGPKIRRIDEPHHKTLYESVSPNTNYTVTVSAIT 525

  Fly  1086 -RFKNGLGRLSEKVTVR-IKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVD 1148
             ..|||     |..|.. :.|...|      |....:|   ||                 ||.:|
  Fly   526 RHKKNG-----EPATGSCLMPVSTP------DAIGRTM---WS-----------------KVNLD 559

  Fly  1149 SQGFSQTQIVPKREIILKHYVKTHTINELS-PFTTYNVNVSAIPSDYSYRP-PTKITVTTQMAAP 1211
            |            :.:||.|:.  .|:|.: |...|.:.:..|.:|....| |.|:.:.|.....
  Fly   560 S------------KYVLKLYLP--KISERNGPICCYRLYLVRINNDNKELPDPEKLNIATYQEVH 610

  Fly  1212 QPMV----------------KPDFY-----------GVV--NGE---------------EILVIL 1232
            ...|                :|:.:           .::  |.|               ||:.|.
  Fly   611 SDNVTRSSAYIAEMISSKYFRPEIFLGDEKRFSENNDIIRDNDEICRKCLEGTPFLRKPEIIHIP 675

  Fly  1233 PQASEEYGPISHYYLVVVPEDKSNLHKIPD------QFLTDDLLPGRNKPERPNAPYIAAKFPQR 1291
            ||.|...   |...|.::.| |.||.|..:      :.|...|...||.......|.::|..|  
  Fly   676 PQGSLSN---SDSELPILSE-KDNLIKGANLTEHALKILESKLRDKRNAVTSDENPILSAVNP-- 734

  Fly  1292 SIPFTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREAPPGER 1356
            ::|  .|..|.|.:    :.:::....|..|:..:|......|...|.:.:.::           
  Fly   735 NVP--LHDSSRDVF----DGEIDINSNYTGFLEIIVRDRNNALMAYSKYFDIIT----------- 782

  Fly  1357 PHRPDPNWPAEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCVV------KRRRQPCKTP 1415
                 |...|||..|:| |.|      ..|.:.|....|...:|::.:|      |:.:...:..
  Fly   783 -----PATEAEPIQSLN-NMD------YYLSIGVKAGAVLLGVILVFIVLWVFHHKKTKNELQGE 835

  Fly  1416 DQAAVTRPLMAADLGAGPTPSDPVDMRR----LNFQTPGMISHP-----PIPISEFANHIERLKS 1471
            |...:...|..|..|           ||    .:|.|.|  :|.     ||...:..|..:....
  Fly   836 DTLTLRDSLSRALFG-----------RRNHNHSHFITSG--NHKGFDAGPIHRLDLENAYKNRHK 887

  Fly  1472 NDNQKFSQEYESIEPGQ--QFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINAN 1534
            :.:..|.:|||.: |.:  ..|..||:|:.|..||||.::.|||.:||:|..:.|:..:||||||
  Fly   888 DTDYGFLREYEML-PNRFSDRTTKNSDLKENACKNRYPDIKAYDQTRVKLAVINGLQTTDYINAN 951

  Fly  1535 YCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTR--GTETY 1597
            :..||::...::..|||::.|..|||||.||.....|||:|.|||..:.||.:|||.:  .|:.:
  Fly   952 FVIGYKERKKFICAQGPMESTIDDFWRMIWEQHLEIIVMLTNLEEYNKAKCAKYWPEKVFDTKQF 1016

  Fly  1598 GQIFVTITETQELATYSIRTFQLCRQGFN-----DRREIKQLQFTAWPDHGVPDHPAPFLQFLRR 1657
            |.|.|...:.::...|..||..:.:...|     |||:|.|..:..|.|...|:||...::|:|:
  Fly  1017 GDILVKFAQERKTGDYIERTLNVSKNKANVGEEEDRRQITQYHYLTWKDFMAPEHPHGIIKFIRQ 1081

  Fly  1658 CRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQY 1722
            ..::...:.||::|||||||||||..:.:||::::::.|..:.||..|..||.|||::||:..||
  Fly  1082 INSVYSLQRGPILVHCSAGVGRTGTLVALDSLIQQLEEEDSVSIYNTVCDLRHQRNFLVQSLKQY 1146

  Fly  1723 IFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLP 1787
            ||::.|:|:....|.|::....:.:.::.|. .:|.|....:||||:||.....:.||      .
  Fly  1147 IFLYRALLDTGTFGNTDICIDTMASAIESLK-RKPNEGKCKLEVEFEKLLATADEISK------S 1204

  Fly  1788 C-------NKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYRYRSAYIAAQGPVQDAA 1845
            |       |..|||...|:||:.:||.|||:...|.|.|:|||||:||.....:|.||.|:::..
  Fly  1205 CSVGENEENNMKNRSQEIIPYDRNRVILTPLPMRENSTYINASFIEGYDNSETFIIAQDPLENTI 1269

  Fly  1846 EDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRYQYYVVDPIAEYNMPQYKLREFKVT 1910
            .|||||:.|.:.|.:||::::.: |..||.:||..: .|:|.:.:|..:...:.|.|..|||.||
  Fly  1270 GDFWRMISEQSVTTLVMISEIGD-GPRKCPRYWADD-EVQYDHILVKYVHSESCPYYTRREFYVT 1332

  Fly  1911 DARDGSSRTVRQFQFIDWP--EQGVPKSGEGFIDFIGQV---HKTKEQFGQDGPITVHCSAGVGR 1970
            :.:...:..|.|||:..||  :..||:...|.|:.:.|.   :|..:..|...|:|||||.|..|
  Fly  1333 NCKIDDTLKVTQFQYNGWPTVDGEVPEVCRGIIELVDQAYNHYKNNKNSGCRSPLTVHCSLGTDR 1397

  Fly  1971 SGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCYRAALEY 2023
            |.:|:.:.|:::.::.|..:|:..|.|.|||||..::.:..||.|.:||.:.|
  Fly  1398 SSIFVAMCILVQHLRLEKCVDICATTRKLRSQRTGLINSYAQYEFLHRAIINY 1450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020 9/50 (18%)
FN3 832..907 CDD:238020 23/93 (25%)
FN3 914..1005 CDD:238020 26/104 (25%)
FN3 1012..1101 CDD:238020 26/103 (25%)
fn3 1106..1198 CDD:278470 18/92 (20%)
PTPc 1476..1731 CDD:214550 103/263 (39%)
PTPc 1503..1731 CDD:238006 93/234 (40%)
PTPc 1763..2022 CDD:214550 97/270 (36%)
PTPc 1791..2022 CDD:238006 87/235 (37%)
Ptp69DNP_524048.2 IG_like 139..233 CDD:214653 12/65 (18%)
Ig 150..221 CDD:143165 10/53 (19%)
fn3 237..321 CDD:278470 24/90 (27%)
FN3 339..432 CDD:238020 28/110 (25%)
FN3 439..535 CDD:238020 25/101 (25%)
PTPc 892..1155 CDD:214550 103/263 (39%)
PTPc 920..1155 CDD:238006 93/234 (40%)
PHA02694 <1121..1206 CDD:177476 29/91 (32%)
PTPc 1186..1449 CDD:214550 97/270 (36%)
PTPc 1216..1449 CDD:238006 87/234 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45443574
Domainoid 1 1.000 156 1.000 Domainoid score I1041
eggNOG 1 0.900 - - E2759_KOG4228
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm46470
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19134
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.840

Return to query results.
Submit another query.