DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and ptpn11b

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_956748.1 Gene:ptpn11b / 393426 ZFINID:ZDB-GENE-040426-1158 Length:592 Species:Danio rerio


Alignment Length:401 Identity:136/401 - (33%)
Similarity:197/401 - (49%) Gaps:66/401 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1428 DLGAG---PTPSDPVDMRRLN--FQTPGMISHPPIPI-------SEFANHIERL-KSNDN----- 1474
            |:|.|   .|.:|.|:..:.|  .:..|::.|...|.       :...|.:..| |..||     
Zfish   180 DVGGGERFDTLADLVEHYKKNPMVEESGIVVHLKQPFNATRINAANIENRVHELNKVADNSEKPK 244

  Fly  1475 QKFSQEYESIEPGQQ-----FTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVE-GVVGSDYINA 1533
            |.|.:|:|.::  ||     :.........||:||||.|:..:|.:|||:...: .|.|||||||
Zfish   245 QGFWEEFEVLQ--QQECKLLYPRKEGQRPENKNKNRYKNILPFDTTRVQIKEADPDVPGSDYINA 307

  Fly  1534 NYCDGYRKH-------NAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWP- 1590
            ||.....:.       ..::||||.||.|.:|||:|.::..|..|||.|:..||.|.||.:||| 
Zfish   308 NYIRSVNEEGRHMDEGKVFIATQGCLQNTVLDFWKMVYQENTHVIVMTTKEMERGRNKCVRYWPD 372

  Fly  1591 TRGTETYGQIFVTITETQELATYSIRTFQLCRQGFNDRRE----IKQLQFTAWPDHGVPDHPAPF 1651
            ...|:.:|::.|...|......|..|..::.|.   ||||    |...|:.:|||||||:.|...
Zfish   373 LNSTKEFGKVCVKNIEEHTAQDYIRRELEVTRL---DRREPPRCIWHYQYLSWPDHGVPNEPGGV 434

  Fly  1652 LQFLRRCRALTP--PESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKI---IDIYGHVTCLRAQ 1711
            |.||.:......  |||||::||||||:||||..||||.:::.:..:.:   |||...:..:|.|
Zfish   435 LSFLEQVNRTQSAIPESGPIVVHCSAGIGRTGTIIVIDILIDIINRQGLDCDIDIPKTIQRVRQQ 499

  Fly  1712 RNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGME---VEFKKLSN 1773
            |:.|||||.||.||:.|:.:.|             ...||.|..|........|   :::.::||
Zfish   500 RSGMVQTEAQYKFIYMAVQQYI-------------DTAQKRLEEEQRNKTKEREYSNIKYPQMSN 551

  Fly  1774 VK----MDSSK 1780
            .:    |.||:
Zfish   552 ARAKPNMSSSR 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 105/254 (41%)
R-PTP-LAR-2 1784..2021 CDD:350402
ptpn11bNP_956748.1 SH2_N-SH2_SHP_like 5..103 CDD:198203
SH2_C-SH2_SHP_like 111..218 CDD:198185 10/37 (27%)
PTPc-N11_6 273..523 CDD:350392 105/265 (40%)
Blue background indicates that the domain is not in the aligned region.

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