DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Ptprt

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_063140269.1 Gene:Ptprt / 362263 RGDID:1309653 Length:1487 Species:Rattus norvegicus


Alignment Length:1640 Identity:431/1640 - (26%)
Similarity:675/1640 - (41%) Gaps:433/1640 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   570 ISNSEAYTLDGLYPDTLYYIWLAARSQRGEGATTPPIPVRTKQYGAPPRNITAIATSSTTISLSW 634
            :..::.:.:|       ::.:.::|.:...||....:.|.....|.|..|::.:.|.      .|
  Rat    99 LKENDTHCID-------FHYYFSSRDRSSPGALNVYVKVNGGPQGNPVWNVSGVVTE------GW 150

  Fly   635 LPPPVERSNGRIIYYKVFFVEVGREDDEATTMTLNMTSIVLDELKRWTEYKIWVLAGTSVGDGPR 699
            :...:..|.....:|:|.|        |:.::..:...|.:||::        |||...     |
  Rat   151 VKAELAISTFWPHFYQVIF--------ESVSLKGHPGYIAVDEVR--------VLAHPC-----R 194

  Fly   700 SHPIILRTQEDVPGDPQDVKATPLNSTSIHVSWKPPLEKDRNGIIRGYHIHAQELRDEGKGFLNE 764
            ..|..||                |.:..::|......:....|   .:..|.:....:..|....
  Rat   195 KAPHFLR----------------LQNVEVNVGQNATFQCIAGG---KWSQHDKLWLQQWNGRDTA 240

  Fly   765 PFKFDVVDTLEFNVTGLQPDT-KYSIQVAALTRKGDG----DRSAAIVVKTPGGVPVRPTVSL-- 822
            .....||:...|:.|....|| :.|:.......:.||    ...|.::||.| ..|:.|...|  
  Rat   241 LMVTRVVNHRRFSATVSVADTSQRSVSKYRCVIRSDGGSGVSNYAELIVKEP-PTPIAPPELLAV 304

  Fly   823 ------------KIMEREPIVSIELEWERPAQTYGELR-----GYRLRWGVKDQALKEEMLSGPQ 870
                        .|:...||:..|:|:.....|:.|..     .|:| |                
  Rat   305 GATYLWIKPNANSIIGDGPIILKEVEYRTTTGTWAETHIVDSPNYKL-W---------------- 352

  Fly   871 MTKKRFDNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEGTPGGPPSNITIRFQTPD-------- 927
                   :|:..||||.||.             :.:..||..|.|...:|.|.:..|        
  Rat   353 -------HLDPDVEYEIRVL-------------LTRPGEGGTGPPGPPLTTRTKCADPVHGPQNV 397

  Fly   928 --------VLCVTWDP----PTREHRNGIITRYDVQFHKKIDHGLGSERNMTLRKAVFTNLEENT 980
                    .|.:.|:|    .||.|...:..:|                     :.||...:...
  Rat   398 EIVDIRARQLTLQWEPFGYAVTRCHSYNLTVQY---------------------QYVFNQQQYEA 441

  Fly   981 EYIFRVRA-YTKQGAGPF-----------------SDKLIVETERDM-GRAPM-SLQAEATSEQT 1025
            |.:.:..: ||.:|..||                 |::|:|:||.|: |..|: |:|.....|:.
  Rat   442 EEVIQTSSHYTLRGLRPFMTIRLRLLLSNPEGRMESEELVVQTEEDVPGAVPLESIQGGPFEEKI 506

  Fly  1026 AEIWWEPVTSRGKLLGYKIFYTMTAVEDLDDWQTKTVG-LTESADLVNLEKFAQYAVAIAARFKN 1089
            ...|..|..:.|.:..|:|.|             |.|| |..||||                   
  Rat   507 YIQWKPPNETNGVITLYEINY-------------KAVGSLDPSADL------------------- 539

  Fly  1090 GLGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQGFSQ 1154
                .|::..|                                   :|:..:...:||.      
  Rat   540 ----SSQRGKV-----------------------------------FKLRNETHHLFVG------ 559

  Fly  1155 TQIVPKREIILKHYVKTHTINELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQPMVKPDF 1219
                                  |.|.|||:..:.|..:. .:.||....:.|:::||. |.:.|.
  Rat   560 ----------------------LYPGTTYSFTIKASTAK-GFGPPVTTRIATKISAPS-MPEYDA 600

  Fly  1220 YGVVNGEE--ILVILPQASEEYGPISHYYLVVVPE---------DKSNLHKIPDQFLTDDLLPGR 1273
            ...:|..:  |.|:|..|.....|:|.|.|||..|         |......:|..:        |
  Rat   601 DSPLNETDTTITVMLKPAQSRGAPVSVYQLVVKEERLQKSRRAADIIECFSVPVSY--------R 657

  Fly  1274 NKPERPNAPYIAAKFPQRSIPFT--FHLGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQK---- 1332
            |.....:..|.||:....::|.|  |.:|....|:.:.|..|...|.|.|:.:|:.....:    
  Rat   658 NASNLDSLHYFAAELKPSNLPVTQPFTVGDNKTYNGYWNPPLSPLKSYSIYFQALSKANGETKIN 722

  Fly  1333 --HLYTSSPFSEFLSLDMREAPPGERPHRPDPNWPAEPEVSV-NRNKDEPE--------ILWVVL 1386
              .|.|.:|      :...:..||      .|........|. |.|..|||        :..|:.
  Rat   723 CVRLATKAP------MGSAQVTPG------TPLCLLTTGASTQNSNTVEPEKQVDNTVKMAGVIA 775

  Fly  1387 PLMVSTFIVSTALIVLCVVKRRRQ-----------------------------PCKTPDQAAVTR 1422
            .|::...|:   |.|:..:||||.                             |..:.|:.....
  Rat   776 GLLMFIIIL---LGVMLTIKRRRNAYSYSYYLSQRKLAKKQKETQSGAQREMGPVASTDKPTTKL 837

  Fly  1423 PLMAADLG-------------------AGPT---------PSDPVDMR--RLNFQTPGMISHPPI 1457
            .....|.|                   :.||         ..|||:|.  |..||       |.|
  Rat   838 STNRNDEGFSSSSQDVNGFTDGSRGELSQPTLTIQTHPYRTCDPVEMSYPRDQFQ-------PAI 895

  Fly  1458 PISEFANHIERLKSNDNQKFSQEYESIEPGQQFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAV 1522
            .:::...||.::|......|.:|||::..||..:||.:..:.|::||||.|:.:||||||:|..:
  Rat   896 RVADLLQHITQMKRGQGYGFKEEYEALPEGQTASWDTAKEDENRNKNRYGNIISYDHSRVRLLVL 960

  Fly  1523 EGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTR----- 1582
            :|...||||||||.|||.:...|:|||||:|||..|||||.|:..:|:|||:|.|.|..|     
  Rat   961 DGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRHPAEH 1025

  Fly  1583 ---------------IKCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQLCRQGFNDRREIK 1632
                           :||.:|||. .||.||.|.||:.||:.||.|.||||.:.::|:::.||::
  Rat  1026 TVGTATLGRAASPGMVKCVRYWPD-DTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELR 1089

  Fly  1633 QLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEK 1697
            ...||:|||||||.:....|.|:|:.:.|.|||:||::||||||.|||||:|.||:||:..::|.
  Rat  1090 LFHFTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFIAIDTMLDMAENEG 1154

  Fly  1698 IIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPA---RNLHTHLQKLLITEPGE 1759
            ::||:..|..|||||..:||||:||:|:|||||||.:||.|.:|.   |:|:.::.:|   :|..
  Rat  1155 VVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGNTAIPVCEFRSLYYNISRL---DPQT 1216

  Fly  1760 TISGMEVEFKKLSNV--KMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNA 1822
            ..|.::.||:.|:.|  ::.........||.|..|||.:.:||.:....:|..:.| |.|:|:||
  Rat  1217 NSSQIKDEFQTLNIVTPRVRPEDCSIGLLPRNHDKNRSMDVLPLDRCLPFLISVDG-ESSNYINA 1280

  Fly  1823 SFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRY- 1886
            :.:|.::..:|::..|.|:.:...||||:::::|.:.||||.::..  .:.|.||||.:.|..| 
  Rat  1281 ALMDSHKQPAAFVVTQHPLPNTVADFWRLVFDYNCSSVVMLNEMDT--AQLCMQYWPEKTSGCYG 1343

  Fly  1887 --QYYVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPE-QGVPKSGEGFIDFIGQVH 1948
              |...|....:.::.....|...:...:|| .|.|:..|:|.||. :..|.|....:..:.::.
  Rat  1344 PIQVEFVSADIDEDIIHRIFRICNMARPQDG-YRIVQHLQYIGWPAYRDTPPSKRSLLKAVRRLE 1407

  Fly  1949 KTKEQF-GQDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQ 2012
            |.:|:: |::|...|||..|.||||.|..:..|.|.:|.:.::|||..|:.||:.:..||:|.:|
  Rat  1408 KWQEEYDGREGRTVVHCLNGGGRSGTFCAICSVCEMIQQQNIIDVFHIVKTLRNNKSNMVETLEQ 1472

  Fly  2013 YHFCYRAALEYLGSF 2027
            |.|.|..|||||.||
  Rat  1473 YKFVYEVALEYLSSF 1487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628 28/176 (16%)
FN3 712..810 CDD:238020 16/102 (16%)
FN3 832..898 CDD:214495 14/70 (20%)
FN3 <867..1269 CDD:442628 86/453 (19%)
fn3 914..998 CDD:394996 19/121 (16%)
R-PTPc-LAR-1 1498..1735 CDD:350401 129/256 (50%)
R-PTP-LAR-2 1784..2021 CDD:350402 77/241 (32%)
PtprtXP_063140269.1 None
Blue background indicates that the domain is not in the aligned region.

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