DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Ptprf

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_038966082.1 Gene:Ptprf / 360406 RGDID:3453 Length:1924 Species:Rattus norvegicus


Alignment Length:2102 Identity:974/2102 - (46%)
Similarity:1277/2102 - (60%) Gaps:260/2102 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GLQMTAARPIAALSLLVLSLLTWTHPTIVDAAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPS 66
            |.:|....|    :|::|.|:...|     ....|..::.|::|....||||||.|.|.|:|.|.
  Rat     8 GRRMVPLVP----ALVMLGLMAGAH-----GDSKPVFVKVPEDQIGLSGGVASFVCQATGEPKPR 63

  Fly    67 IVWRKNGKKVSGTQSRYTVLE-QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY 130
            |.|.|.|||||  ..|:.|:| ..|..|:|||:|:|..||:|.|||.|.|.:|: ::..|.|::.
  Rat    64 ITWMKKGKKVS--SQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNSLGE-INTSAKLSVL 125

  Fly   131 EGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD---- 191
            |.|:.|:|||.|..||..:|:|...|..|.|.|.|||.|.|.|.|:...||.::....:|.    
  Rat   126 EEDQLPSGFPTIDMGPQLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPASSNGRIKQLRSG 190

  Fly   192 -----GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVPPTFSRPPETISEVMLGSN 251
                 |.||||:|.|.|||||||||.||.||.:|...||||:||||.|.||.||.: .|||.|.|
  Rat   191 GSPIRGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPRFSIPPSS-QEVMPGGN 254

  Fly   252 LNLSCIAVGSPMPHVKWMKGSEDLTPENEMPIGRNVLQLINIQESANYTCIAASTLGQIDSVSVV 316
            :||:|:|||:|||:||||.|:|:||.|:|||:|||||:|.|:..||||||:|.|:||.|::.:.|
  Rat   255 VNLTCVAVGAPMPYVKWMMGAEELTKEDEMPVGRNVLELSNVMRSANYTCVAISSLGMIEATAQV 319

  Fly   317 KVQSLPTAPTDVQISEVTATSVRLEWSYKGPEDLQYYVIQYKPKNANQAFSEISGIITMYYVVRA 381
            .|::||..|.|:.::|.|||||.|.|.....|.:.:|.|||:....:..|.|:.|:.:..|.:..
  Rat   320 TVKALPKPPIDLVVTETTATSVTLTWDSGNTEPVSFYGIQYRAAGTDGPFQEVDGVASTRYSIGG 384

  Fly   382 LSPYTEYEFYVIAVNNIGRGPPSAPATCTTGDFSFGGTKMESAPRNVQVRTLSSSTMVITWEPPE 446
            |||::||.|.|:|||:|||||||......||:     ....|.||.||.|.||:|||::.|||||
  Rat   385 LSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE-----QAPSSPPRRVQARMLSASTMLVQWEPPE 444

  Fly   447 TPNGQVTGYKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHAIYTVRVQAYTSMGAGPMSTPV 511
            .|||.|.||:||||.:|.:|.::|:....|...||||..|.|...|::||.|:|::|.||.|..:
  Rat   445 EPNGLVRGYRVYYTPDSRRPLSAWHKHNTDAGLLTTVGSLLPGITYSLRVLAFTAVGDGPPSPTI 509

  Fly   512 QVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHSSENIVHYEL-YWNDTYANQAHHKRISNSEA 575
            |||.|||||:||::|:|....:|.:.|.|..|  ..|.|:.||| ||......|.|......:.:
  Rat   510 QVKTQQGVPAQPADFQAKAESDTRIQLSWLLP--PQERIIKYELVYWAAEDEGQQHKVTFDPTSS 572

  Fly   576 YTLDGLYPDTLYYIWLAARSQRGEGATTPPIPVRTKQY--GAPPRNITAIATSSTTISLSWLPPP 638
            |||:.|.|||||:..|||||..|.|..||.:..||.|.  .|||:.:|.::|.|||:.:||:|||
  Rat   573 YTLEDLKPDTLYHFQLAARSDLGVGVFTPTVEARTAQSTPSAPPQKVTCVSTGSTTVRVSWVPPP 637

  Fly   639 VERSNGRIIYYKVFFVEVGREDDE---ATTMTLNMTSIVLDELKRWTEYKIWVLAGTSVGDGPRS 700
            .:..||.|..|.|.:..|..||.:   ...::...:|..|..|::||||::||.|.|.||.||.|
  Rat   638 ADSRNGIITQYSVAYEAVDGEDRKRHVVDGISREHSSWDLLGLEKWTEYRVWVRAHTDVGPGPES 702

  Fly   701 HPIILRTQEDVP-GDPQDVKATPLNSTSIHVSWKPPLEKDRNGIIRGYHIHAQELRD-EGKGFLN 763
            .|:::||.|||| |.|:.|:..|||||::|||||.|:...::|.||||.:....|.: |.:|   
  Rat   703 SPVLVRTDEDVPSGPPRKVEVEPLNSTAVHVSWKLPVPNKQHGQIRGYQVTYVRLENGEPRG--- 764

  Fly   764 EPFKFDVV-----------DTLEFNVTGLQPDTKYSIQVAALTRKGDGDRSAAIVVKTPGGVPVR 817
            :|...||:           :..|..::||.|:|.|||.|||.|.||||.||...||.|.|.||.|
  Rat   765 QPIIQDVMLAEAQWRPEESEDYETTISGLTPETTYSITVAAYTTKGDGARSKPKVVTTTGAVPGR 829

  Fly   818 PTVSLKIMEREPIVSIELEWERPAQTYGELRGYRLRWGVKDQALKEEMLSGPQMTKKRFDNLERG 882
            ||:.:........:   |:|..|.:..|||.||||::...|:|....:..|..........|.:|
  Rat   830 PTMMVSTTAMHTAL---LQWHPPKELPGELLGYRLQYRRADEARPNTIDFGKDDQHFTVTGLHKG 891

  Fly   883 VEYEFRVAGSNHIGIGQETVKIFQTPEGTPGGPPSNITIRFQTPDVLCVTWDPPTREHRNGIITR 947
            ..|.||:|..|..|.|:|..|...|||..|.|.|.|:.:...|.....:.||||....|||.||.
  Rat   892 ATYIFRLAAKNRAGPGEEFEKEITTPEDAPSGFPQNLRVTGLTTSTTELAWDPPVLAERNGRITN 956

  Fly   948 Y-----DVQFHKKIDHGLGSERNMTLRKAVFTNLEENTEYIFRVRAYTKQGAGPFSDKLIVETER 1007
            |     |:....::.:..| :.::||     ..|:.:|.|..:|||:|.:||||.|..:..:|  
  Rat   957 YTVVYRDINSQHELQNVTG-DVHLTL-----LGLKPDTTYDIKVRAHTSKGAGPLSPSIQSQT-- 1013

  Fly  1008 DMGRAPM------SLQAEATSEQTAEIWWEPVTSRGKLLGYKIFYTMTAVEDLDDWQTKTVGLTE 1066
                .||      :.:..|..:.:..:.||...|....:.:||.|...:|| :|....:.:    
  Rat  1014 ----MPMEQVFAKNFRVAAAMKTSVLLSWEVPDSYKSAVPFKILYNGQSVE-VDGHSMRKL---- 1069

  Fly  1067 SADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLSWSPPIRL 1131
               :.:|:...:|:..:..| .:..|.|...|::|..|:.:|                 ..|:  
  Rat  1070 ---IADLQPNTEYSFVLMNR-GSSAGGLQHLVSIRTAPDLLP-----------------QKPL-- 1111

  Fly  1132 TPVNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYVKTHTINELSPFTTYNVNVSAIPSDYSY 1196
             |.:         .|::...||                                           
  Rat  1112 -PAS---------AFIEDGRFS------------------------------------------- 1123

  Fly  1197 RPPTKITVTTQMAAPQPMVKPDFYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDK--SNL-- 1257
                                             :.:||. ::...:..:|:||||.|:  .||  
  Rat  1124 ---------------------------------LSMPQV-QDPSLVRWFYIVVVPIDRVGGNLLA 1154

  Fly  1258 --HKIPDQFLTDDLL----PGRNKPERPN------APYIAAKFPQRSIPFTFHLGSGDDYHNFTN 1310
              ...|::...|:||    .|..|..|..      .||:||:..:  :|.||.||...:|..|.|
  Rat  1155 PRWSTPEELELDELLEAIEQGEEKQRRRRRQAERLKPYVAAQVDE--LPETFTLGDKKNYRGFYN 1217

  Fly  1311 RKLEREKRYRIFVRAVVDTP--QKHLYTSSPFSEFLSLDMREAPPGERPHRPDPNWPAEPEVSVN 1373
            |.|..:..|:.||.|.:..|  ||. |.|||:|:.:.:                      :|:..
  Rat  1218 RPLSPDLSYQCFVLASLKEPMDQKR-YASSPYSDEIVV----------------------QVTPA 1259

  Fly  1374 RNKDEPEILWVVLPLMVSTFIVSTALIVLCVV----KRRRQPCKTPDQAAVTRPLMAADLGAGPT 1434
            :.::|||:|||..|::....|:   |||:.::    ||...|....:|:...:..:.|.      
  Rat  1260 QQQEEPEMLWVTGPVLAVILII---LIVIAILLFKRKRTHSPSSKDEQSIGLKDSLLAH------ 1315

  Fly  1435 PSDPVDMRRLNFQTPG-----------MISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQ 1488
            .||||:|||||:||||           |..||||||::.|::|||||:||..|||||||||:|||
  Rat  1316 SSDPVEMRRLNYQTPGSSAPSCPNISSMRDHPPIPITDLADNIERLKANDGLKFSQEYESIDPGQ 1380

  Fly  1489 QFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQ 1553
            ||||:|||.|.||.|||||||.|||||||.|.:::||.|||||||||.|||||.|||:||||||.
  Rat  1381 QFTWENSNSEVNKPKNRYANVIAYDHSRVLLTSIDGVPGSDYINANYIDGYRKQNAYIATQGPLP 1445

  Fly  1554 ETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTF 1618
            ||..|||||.||.:|||:||||||||::|:|||||||.|||||||.|.||:.:|.|||||::|||
  Rat  1446 ETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTETYGLIQVTLVDTVELATYTMRTF 1510

  Fly  1619 QLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCY 1683
            .|.:.|.:::||::|.||.||||||||::|.|.|.||||.:|..|.::||::||||||||||||:
  Rat  1511 ALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMVVHCSAGVGRTGCF 1575

  Fly  1684 IVIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTH 1748
            ||||:|||||||||.:||||||||:|:||||||||||||:|||:|:|||.:||.|||.||||:.|
  Rat  1576 IVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAAMCGHTEVLARNLYAH 1640

  Fly  1749 LQKLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHG 1813
            :|||....|||:::.||:|||.|:|.|..:|:|::|||||||.|||||:|:|||.:||.|.||.|
  Rat  1641 IQKLGQVPPGESVTAMELEFKLLANSKAHTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRG 1705

  Fly  1814 IEGSDYVNASFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYW 1878
            :|||||:||||:||||.:.||||.|||:.::.||||||||||||||:||||||:|||||||.|||
  Rat  1706 VEGSDYINASFLDGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYW 1770

  Fly  1879 PHERSVRYQYYVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDF 1943
            |.|||.||||:||||:||||||||.||||||||||||.|||:|||||.|||||||||:|||||||
  Rat  1771 PAERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDF 1835

  Fly  1944 IGQVHKTKEQFGQDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQ 2008
            |||||||||||||||||||||||||||:|||||||||||||:||||:|:||||:.||:|||||||
  Rat  1836 IGQVHKTKEQFGQDGPITVHCSAGVGRTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQ 1900

  Fly  2009 TEDQYHFCYRAALEYLGSFDNY 2030
            |||||..|||||||||||||:|
  Rat  1901 TEDQYQLCYRAALEYLGSFDHY 1922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151 43/93 (46%)
Ig strand B 53..57 CDD:409353 3/3 (100%)
Ig strand C 66..70 CDD:409353 1/3 (33%)
Ig strand E 93..97 CDD:409353 2/3 (67%)
Ig strand F 108..113 CDD:409353 3/4 (75%)
Ig strand G 122..125 CDD:409353 0/2 (0%)
Ig 141..228 CDD:472250 43/95 (45%)
Ig strand B 157..161 CDD:409353 1/3 (33%)
Ig strand C 170..174 CDD:409353 1/3 (33%)
Ig strand E 192..196 CDD:409353 2/3 (67%)
Ig strand F 206..211 CDD:409353 4/4 (100%)
Ig strand G 218..221 CDD:409353 0/2 (0%)
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401 48/81 (59%)
Ig strand A 237..239 CDD:409401 1/1 (100%)
Ig strand A' 244..248 CDD:409401 2/3 (67%)
Ig strand B 251..259 CDD:409401 4/7 (57%)
Ig strand C 264..270 CDD:409401 4/5 (80%)
Ig strand C' 272..274 CDD:409401 0/1 (0%)
Ig strand D 277..281 CDD:409401 1/3 (33%)
Ig strand E 286..291 CDD:409401 3/4 (75%)
Ig strand F 298..305 CDD:409401 5/6 (83%)
Ig strand G 309..318 CDD:409401 2/8 (25%)
FN3 322..411 CDD:238020 37/88 (42%)
FN3 <382..747 CDD:442628 171/371 (46%)
FN3 712..810 CDD:238020 46/110 (42%)
FN3 832..898 CDD:214495 21/65 (32%)
FN3 <867..1269 CDD:442628 85/418 (20%)
fn3 914..998 CDD:394996 29/88 (33%)
R-PTPc-LAR-1 1498..1735 CDD:350401 169/236 (72%)
R-PTP-LAR-2 1784..2021 CDD:350402 195/236 (83%)
PtprfXP_038966082.1 I-set 33..124 CDD:400151 43/93 (46%)
Ig strand B 50..54 CDD:409353 3/3 (100%)
Ig strand C 63..67 CDD:409353 1/3 (33%)
Ig strand E 86..93 CDD:409353 3/6 (50%)
Ig strand F 104..109 CDD:409353 3/4 (75%)
Ig strand G 117..120 CDD:409353 0/2 (0%)
IgI_2_RPTP_IIa_LAR_like 136..232 CDD:409400 43/95 (45%)
Ig strand A 136..138 CDD:409400 0/1 (0%)
Ig strand A' 143..147 CDD:409400 1/3 (33%)
Ig strand B 150..159 CDD:409400 3/8 (38%)
Ig strand C 164..170 CDD:409400 3/5 (60%)
Ig strand C' 172..174 CDD:409400 0/1 (0%)
Ig strand D 183..187 CDD:409400 1/3 (33%)
Ig strand E 196..201 CDD:409400 3/4 (75%)
Ig strand F 210..217 CDD:409400 6/6 (100%)
Ig strand G 220..231 CDD:409400 5/10 (50%)
IgI_3_RPTP_IIa_LAR_like 241..322 CDD:409401 48/81 (59%)
Ig strand A 241..243 CDD:409401 1/1 (100%)
Ig strand A' 247..251 CDD:409401 2/3 (67%)
Ig strand B 254..262 CDD:409401 4/7 (57%)
Ig strand C 267..273 CDD:409401 4/5 (80%)
Ig strand C' 275..277 CDD:409401 0/1 (0%)
Ig strand D 280..284 CDD:409401 1/3 (33%)
Ig strand E 289..294 CDD:409401 3/4 (75%)
FN3 294..718 CDD:442628 190/430 (44%)
Ig strand F 301..308 CDD:409401 5/6 (83%)
Ig strand G 312..321 CDD:409401 2/8 (25%)
FN3 598..1065 CDD:442628 172/485 (35%)
PTP_DSP_cys 1352..1627 CDD:475123 196/274 (72%)
R-PTP-F-2 1629..1919 CDD:350477 225/289 (78%)

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