DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and ptprna

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001124060.2 Gene:ptprna / 324790 ZFINID:ZDB-GENE-030131-3511 Length:903 Species:Danio rerio


Alignment Length:984 Identity:224/984 - (22%)
Similarity:376/984 - (38%) Gaps:243/984 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly  1134 VNYKISFDAMKVF------VDSQGFS-QTQIVPKREIILKHYVKTHTINELSPFTTYNVNVSAIP 1191
            |.|::|...::..      :..|||| |.:|.  ::||.|         |||             
Zfish    57 VQYQVSVPVLQRLQQVLKELMLQGFSWQDEIT--QQIIAK---------ELS------------- 97

  Fly  1192 SDYSYRPPTKITVTTQMAAPQPMVKPDFYGVVNGEEILVILPQASEEYGPISHY--YLVVVPEDK 1254
                 |.|...|..:|.|.|.|......|...|.|.            ||...|  |:|:.|...
Zfish    98 -----RIPHTRTQKSQNAQPPPPAAKKVYSSPNSEP------------GPAQSYVDYMVLDPHQS 145

  Fly  1255 SNLHKIPDQFLTDDLLPGRNKPERPNAPYIAAKFPQRSIPFTFHLGSGDDYHNFTNR--KLEREK 1317
            |.|                .....|..||   .:.|..:..:.|..:...|...::|  ..:||:
Zfish   146 SPL----------------RMQTVPVDPY---SYLQEGMTHSLHPHASMGYQRPSSRSGSQQRER 191

  Fly  1318 RYRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREAPPGERPHRPDPNWPAE--PEVSVNR---NKD 1377
            ..::...||      .||.||....|........|..  |:..|.::|.|  .:.:::.   ||.
Zfish   192 DRQLLQDAV------SLYLSSAQPSFRHRGAAALPAA--PYYEDLDFPLEYGEDYTLHEQRTNKK 248

  Fly  1378 EPE------------------IL--WVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTR 1422
            .|:                  :|  :.|.|..:|...:....:||.:::...:..::|....|..
Zfish   249 PPQDYSSVAGLDDDTLTQLGSLLKGFGVDPRDLSPQQIKRLTLVLQLLQNMEKTDQSPGTVTVKE 313

  Fly  1423 PLMAAD----------------LGAGPT----PSDPVDMRRLNFQTPGMISHPPIPI-------- 1459
            .::|..                |.:.||    |:.|.     :..||..::.|..|.        
Zfish   314 TIVAGSDKVTENGGKSPSTISALPSAPTHQQAPTQPP-----STSTPAPVTVPAEPTLSAKDLDL 373

  Fly  1460 -SEFANHIERLKSNDNQKFSQEYESIEPGQQF--TWDNSNLEHNKSKNRYANVTAYDHSRVQLPA 1521
             .:.||.::..|...|.:  :||..|...|..  .:|...|....::..:.:.:::.:..|...|
Zfish   374 KEKTANILKTTKDGTNTR--EEYGYIVTNQSHLSLYDGVKLLETLAERIHLSTSSFINISVVGSA 436

  Fly  1522 VEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEER------ 1580
            :...:..:.:|.:..|        ||.:...::.|:       |.:|...::.|.:.||      
Zfish   437 LTFRIRQNALNLSAED--------VANKAVAEKNFL-------EGETGLKIIQTGVGERSEGRGL 486

  Fly  1581 ---TRIKCDQYWPTRGTETYGQIFVTI----TETQELATYSIRTFQLCRQGFNDRREIKQLQFTA 1638
               |||         |..:.|.:...:    ..|..|...::...:      :..|::...:...
Zfish   487 PQATRI---------GEGSRGVVLTMVAMACVGTVLLVALAVACLR------HHARQLASGKLGL 536

  Fly  1639 WPDHGVPDHPAPFLQFLRRCR-------ALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHE 1696
            .|:.|...|    ..:...||       :.|.||.|          ||.|    .|:        
Zfish   537 GPEAGAETH----FDYQELCRQHMAAKSSFTRPEPG----------GRRG----TDT-------- 575

  Fly  1697 KIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPAR-NLHTHLQKLLITEPGET 1760
                  ..|:.:.:|.:...|        |.....:.....:|.||: |:......:::....:.
Zfish   576 ------SRVSSVSSQFSDGPQ--------HSPSSHSSTPSWSEEPAQSNMDISTGHMILAYMEDH 626

  Fly  1761 ISG---MEVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNA 1822
            :..   ::.|::.|.:.:.:.|....|....|..|||....:||:.|||.|.........||:||
Zfish   627 LKNKDRLQKEWEALCSYQAEPSSVSVAQCESNMEKNRYPDFVPYDHSRVKLKAEVNPSKGDYINA 691

  Fly  1823 SFIDGYRYR-SAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRY 1886
            |.|..:..| .||||.|||:.....|||:|:||:..|::||:|.|.|.|.::|.:|||.|.|..|
Zfish   692 STIIDHDPRLPAYIATQGPLPHTVADFWQMVWENGCTVIVMMTALVEDGEKQCERYWPDEGSSLY 756

  Fly  1887 QYYVVDPIAEYN-MPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDFIGQVHKT 1950
            ..|.|:.::|:. ...:.:|.|.:.:.:...:||:.||..:.||..|:|.|....:||..:|:|.
Zfish   757 NIYEVNLVSEHIWCKDFLVRSFYLKNVQTQETRTLTQFHLLSWPANGIPSSTRPLLDFRRKVNKC 821

  Fly  1951 KEQFGQDGPITVHCSAGVGRSGVFITLSIVLERMQYEGV--LDVFQTVRILRSQRPAMVQTEDQY 2013
            ..  |:..||.||||.|.||:|.:|.:.:||.||. :||  :|:..|:..:|.|||:||:|:||:
Zfish   822 YR--GRSCPIIVHCSNGTGRTGTYILIDMVLNRMA-KGVKEIDIAATLEHIRDQRPSMVRTKDQF 883

  Fly  2014 HFCYRAALE 2022
            .|...|..|
Zfish   884 EFALTAVAE 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628 33/143 (23%)
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 37/256 (14%)
R-PTP-LAR-2 1784..2021 CDD:350402 94/240 (39%)
ptprnaNP_001124060.2 RESP18 60..>105 CDD:464394 15/73 (21%)
Receptor_IA-2 392..480 CDD:463293 16/102 (16%)
PTP_DSP_cys 617..897 CDD:475123 98/279 (35%)
Blue background indicates that the domain is not in the aligned region.

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