DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and col14a1a

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_009290436.2 Gene:col14a1a / 321298 ZFINID:ZDB-GENE-030131-9889 Length:1879 Species:Danio rerio


Alignment Length:1362 Identity:273/1362 - (20%)
Similarity:471/1362 - (34%) Gaps:402/1362 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 GVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAEN 115
            |:|.:    .||  |.|.|..||....                    |.|.....:.||:     
Zfish   198 GLAQY----SGD--PRIEWHLNGFSTK--------------------EAVIDAVKNLPYK----- 231

  Fly   116 GVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKV 180
             .|:.::..|...:.|....|      ..|....:.::|  :|:|              ..:::.
Zfish   232 -GGNTLTGLALTYVLENSFKP------ESGARDNIPKIG--ILIT--------------DGKSQD 273

  Fly   181 DMSNPRYSLKDGFLQI---------EN------SREEDQGKYECVAENSMGT----------EHS 220
            |:.:|..:|:...:::         ||      |..||...|.....:.|||          :..
Zfish   274 DVISPAQTLRSSGVELFAIGVKNADENELKAIASEPEDTHVYNVADFSIMGTIVEGLTRTVCDGV 338

  Fly   221 KATNLYVKVRRVPPTFSRPPETISEVMLGSNLNLSCIAVGSPMPHVKWMKGS------------E 273
            :..:..:|...|      |.||:|     :.|||....|.:....|.|...:            .
Zfish   339 EQQDKEIKQDSV------PEETVS-----TPLNLLISEVTAHSFRVSWTHSAGKVEKYRVVYHPT 392

  Fly   274 DLTPENEMPIG--RNVLQLINIQESANYTCIAASTLGQIDSVSVVK----VQSLPTAPTDVQISE 332
            |.....|:.:|  .|.:.|.|:.....|. ||...:.:..:...::    .|:|||. :|:::.:
Zfish   393 DADIPEEIVVGGLENSVVLQNLNSLTEYE-IAVFAVYRSAASDALRGSEITQALPTV-SDLELYD 455

  Fly   333 VTATSVRLEWSYKGPEDLQYYVIQYKPKNANQAFS------------EISGIITMYYVVRALSPY 385
            ||.:|:|..|  :..|....|:|.|.|.:::....            |::|:|          |.
Zfish   456 VTDSSMRARW--RDAEGASGYMILYAPLSSDTPDERELKVDETVTDVELTGLI----------PD 508

  Fly   386 TEYEFYVIAVNNIGRGPPSAPATCTTGDFSFGGTKMESAPRNVQVRTLSSSTMVITWEPPETPNG 450
            |||...|.|  ..|. ..|.|||......|.      ..|||::|..:..|::.:.|   ::.:.
Zfish   509 TEYTVTVYA--TFGE-EASDPATVQETTMSL------KPPRNLRVTEVDHSSVRLNW---DSASS 561

  Fly   451 QVTGYKVYYT----TNSNQPEASWNSQMVDNSELTTVSELTPHAIYTVRVQAYTSMG-----AGP 506
            :|.||:|.|.    ..:||.|..    .|.|..|..:|.||.   |||.|.|....|     :|.
Zfish   562 KVKGYQVIYVKTDGVQTNQVELG----PVTNVYLKNLSPLTE---YTVAVFAVYDGGQSEALSGG 619

  Fly   507 MSTPVQVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHSSENIVHYELYWNDTYANQAHHKRIS 571
            .||.:       ||: |.:...:|:...:..:.|   :|.:.::|.|:|.|:.|.........::
Zfish   620 FSTKL-------VPA-PFSLMTSDVTSESFQVSW---SHPARDVVLYKLIWSPTAGRDEREVMLA 673

  Fly   572 -NSEAYTLDGLYPDTLYYIWLAARSQRGEGATTP----------------PIPVRTKQYGAPPRN 619
             ::::|.:..|.|.|.|.:.||| ..:.|..::|                .||..|..:.....|
Zfish   674 GDTDSYVIQDLSPFTEYKVSLAA-IYKDETESSPVVVLEYTLGWTTEFPTTIPTTTPIFHQGVTN 737

  Fly   620 ITAIATSSTTISLSWLPPPVERSNGRIIYYKVFFVEVGREDDEATTMTLNMTSIVLDELKRWTEY 684
            :.....:..:|.::|     |..:..:..|||.:|...| .:|...::.|..::||..|...|:|
Zfish   738 LWIDEETPFSIQVNW-----EVQDSDVDQYKVTYVSTDR-TEETVLVSGNRRNVVLQPLLSDTKY 796

  Fly   685 KIWV-----------LAGTSVGDG-PRSHPIILRTQEDVPGDPQDVKATPLNSTSIHVSWKPPLE 737
            ||.|           |:.:|.|.. |.|.|..||..::.             .....:||..|  
Zfish   797 KITVTPVYADEESSQLSMSSFGTTLPLSGPSNLRVSDEW-------------YNRFRISWDSP-- 846

  Fly   738 KDRNGIIRGYHIHAQELRDEGKGFLNEPFKFDVVDTLEFNVTGLQPDTKYSIQVAA--------- 793
               .....||.:..|.:...|:..  |.|..|.|:||  .:..|..||:||:||.|         
Zfish   847 ---QFPTMGYRVIYQPISVSGRAL--ETFVGDDVNTL--LILNLLSDTEYSVQVIASYTTGSSQP 904

  Fly   794 LTRKGDGDRSAAIVVKTPGGVPVRPTVSLKIMEREPIVSIELEWERPAQTYGELRGYRLRWGVKD 858
            ||.||          ||. .:.||...:.:::..    |:..:|    |.:.....||:......
Zfish   905 LTAKG----------KTL-FLGVRNLNTYQVLSS----SVCAQW----QPHRHASVYRVVIESLH 950

  Fly   859 QALKEEMLSGPQMTKKRFDNLERGVEYEFRVAGSNHIGIGQETVKIFQTPEG-----------TP 912
            ...|:|:..|...:::.|..|....:|:..|            ..:.|..||           .|
Zfish   951 NGQKQEVRVGGGASRECFFRLSPNTQYKISV------------YTVLQDTEGPAVTTMVTTALAP 1003

  Fly   913 GGPPSNITIRFQTPDVLCVTWDPPTREHRNGIITRYDVQFHKKIDHGLGSERNMTLRKAVFTNLE 977
            ..||:........|.:      ||.:|....  .:.|:.|.......:|               :
Zfish  1004 TQPPTAAPTTSPPPTI------PPAKEVCKA--AKADLTFLVDGSWSIG---------------D 1045

  Fly   978 ENTEYIFRVRAYTKQGA----GPFSDKLIVETERDMGRAPMSLQA----EATSEQTAEIWWE-PV 1033
            :|.:.|.|. .|:..||    ||...::.:....|..|....|.:    ||..:....|.:: ..
Zfish  1046 DNFQKIIRF-LYSTTGALDVIGPEGTQVAIAQFSDDARTEFKLNSYSDKEALLDAVQRISYKGGN 1109

  Fly  1034 TSRGKLLGY-----------------KIFYTMTAVEDLDDWQTKTVGLTESADLVNLEKFAQYAV 1081
            |..|:.:.:                 |:...:|.....||       :.:.:..:.:|.:..:|:
Zfish  1110 TKTGRAIKHVKEAIFSEDAGVRRGIPKVLVVLTDGRSQDD-------VNKISKEMQMEGYIIFAI 1167

  Fly  1082 AIAARFKNGLGRLSEKVTVR-------------IKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTP 1133
            ..|......|..::.|.:.|             |:.:.:.....|...:..|:.:|.        
Zfish  1168 GFADADYGELVNIASKPSERHVFFVDDLDAFKKIEEQLITFVCEAATATCPSVLMSG-------- 1224

  Fly  1134 VNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYVKTHTIN----ELSPFTTYNVNVSAIPSDY 1194
             |....|..|::|    |.::           |||.....::    ..:.|..|.::..|:.|. 
Zfish  1225 -NTLAGFRMMEMF----GLAE-----------KHYSSVQGVSMEPGTFNSFPCYRLHKDALVSQ- 1272

  Fly  1195 SYRPPTKITVTTQMAAPQPMVKPDFYGVVNGEEILVILPQASEEYGPISHYYLVVVPEDKSN 1256
                ||:..        .|...|..|.:   ..:..|||:..:|  |.:.:.::    ||:|
Zfish  1273 ----PTRYL--------HPEGLPSDYTI---SMLFRILPETPQE--PFALWEIL----DKNN 1313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151 15/77 (19%)
Ig strand B 53..57 CDD:409353 1/3 (33%)
Ig strand C 66..70 CDD:409353 1/3 (33%)
Ig strand E 93..97 CDD:409353 0/3 (0%)
Ig strand F 108..113 CDD:409353 2/4 (50%)
Ig strand G 122..125 CDD:409353 0/2 (0%)
Ig 141..228 CDD:472250 16/111 (14%)
Ig strand B 157..161 CDD:409353 1/3 (33%)
Ig strand C 170..174 CDD:409353 0/3 (0%)
Ig strand E 192..196 CDD:409353 0/3 (0%)
Ig strand F 206..211 CDD:409353 1/4 (25%)
Ig strand G 218..221 CDD:409353 0/2 (0%)
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401 19/99 (19%)
Ig strand A 237..239 CDD:409401 0/1 (0%)
Ig strand A' 244..248 CDD:409401 1/3 (33%)
Ig strand B 251..259 CDD:409401 3/7 (43%)
Ig strand C 264..270 CDD:409401 2/5 (40%)
Ig strand C' 272..274 CDD:409401 0/13 (0%)
Ig strand D 277..281 CDD:409401 0/3 (0%)
Ig strand E 286..291 CDD:409401 1/4 (25%)
Ig strand F 298..305 CDD:409401 3/6 (50%)
Ig strand G 309..318 CDD:409401 0/12 (0%)
FN3 322..411 CDD:238020 27/100 (27%)
FN3 <382..747 CDD:442628 95/402 (24%)
FN3 712..810 CDD:238020 25/106 (24%)
FN3 832..898 CDD:214495 12/65 (18%)
FN3 <867..1269 CDD:442628 73/444 (16%)
fn3 914..998 CDD:394996 17/87 (20%)
R-PTPc-LAR-1 1498..1735 CDD:350401
R-PTP-LAR-2 1784..2021 CDD:350402
col14a1aXP_009290436.2 None
Blue background indicates that the domain is not in the aligned region.

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