DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and Ptp4E

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_525076.2 Gene:Ptp4E / 31425 FlyBaseID:FBgn0004368 Length:1767 Species:Drosophila melanogaster


Alignment Length:1730 Identity:391/1730 - (22%)
Similarity:639/1730 - (36%) Gaps:460/1730 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   352 YYVIQYKP------KNANQAFSEISGIITMYYVVRALSPYTEYEFYVIAVNNIGRGPPSAPATCT 410
            :|.|.|.|      .|.....|:|...|..   .||| |.|||.|::...|:..|...:.....|
  Fly    88 FYRIDYSPPFGFPEPNTTIPASDIGKDIKF---SRAL-PGTEYNFWLYYTNSTHREQLTWTVNIT 148

  Fly   411 TGDFSFGGTKMESAPRNVQVRTLSSSTMVITWEPPETPNGQVTGYKVYYTTNSNQP-EASWNSQM 474
            |.         ...|.|:.|:..||.:..|||.||  .:|:.:|:::.....::.| |.|::.:.
  Fly   149 TA---------PDPPANLSVQLRSSKSAFITWRPP--GSGRYSGFRIRVLGLTDLPFERSYSLEG 202

  Fly   475 VDNSELTTVSELTPHAIYTVRVQAYTSMGAGPMSTPVQVKAQQGVPSQPSNFRATDIGETAVTLQ 539
            .:..:| :..||||...|  :|||| |:..|..|.....:.....|:.|..|......||.:.:.
  Fly   203 NETLQL-SAKELTPGGSY--QVQAY-SVYQGKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVL 263

  Fly   540 WTKP------TH---------SSENIVHYELYWNDTYANQAHHKRISNSEAYTLDGLYPDTLYYI 589
            |..|      ||         :.:::::.|.........||..|           ||.|...|.|
  Fly   264 WQPPFPAGIYTHYRVSITPDDAIQSVLYVEREGEPPGPAQAAFK-----------GLVPGREYNI 317

  Fly   590 WLAARSQRGEGATTPPIPVRTKQYGAPPR--NIT--AIATSSTTISLSWLPPPV----------- 639
            .:...|:    ..|..:|...:....|.|  |:|  ...|:|::..:.|.||..           
  Fly   318 SVQTVSE----DETSSVPTTARYLTVPERVLNVTFDEAYTTSSSFRVRWEPPRTYSEFDAYQVML 378

  Fly   640 ----------ERSNGRIIYYKV-FFVEVGREDDEATTMTLNMTSIVLDELKRWTEYKIWVLAGTS 693
                      ..:||..:|:.. ..:|.||..:.       :...:.|.:..|            
  Fly   379 STSRRIFNVPRAANGDSVYFDYPDILEPGRTYEV-------VVKTIADNVNSW------------ 424

  Fly   694 VGDGPRSHPIILRTQEDVPGDPQDVKA----TPLNSTSIHVSWKPPLEKDRNGIIR-GYH--IHA 751
                |.|..:.||        |:.|::    ....|.::|:||: |.|..|....| .||  .:|
  Fly   425 ----PASGEVTLR--------PRPVRSLGGFLDDRSNALHISWE-PAETGRQDSYRISYHEQTNA 476

  Fly   752 QELRDEGKGFLNEPFKFDV-------VDTLEFNVTGLQPDTKYSIQVAALTRKGDGDRSAAIVVK 809
            .|:          |..|.|       .:..|:.:..|....:|.|.|.||: ||....::.|...
  Fly   477 SEV----------PAPFPVAAESQITTNLTEYTLDSLLAGRRYLIAVQALS-KGVASNASDITRY 530

  Fly   810 TPGGVPVRPTVSLKIMEREPI-VSIELEWERPAQTYGELRGYRLRWGVKDQ--ALKEEMLSGPQM 871
            |      ||...| |.|...| ..:.|.|.      .::...:.|:.|..|  ..:||.......
  Fly   531 T------RPAAPL-IQELRSIDQGLMLSWR------SDVNSRQDRYEVHYQRNGTREERTMATNE 582

  Fly   872 TKKRFDNLERGVEYEFRVAGSNHIGIGQETVKIFQT--PEGTPGGPPSNITIRFQTPDVLCVTWD 934
            |......|..|..||.:|...:| |:..|....||.  |:     ||.|:|::....:::.:.|.
  Fly   583 TSLTIHYLHPGSGYEVKVHAISH-GVRSEPHSYFQAVFPK-----PPQNLTLQTVHTNLVVLHWQ 641

  Fly   935 PPTREHRNGIITRY---------------------DVQFHKK-------IDHGLGS--------- 962
            .|.....:..:.||                     |:.:.::       :..|:.|         
  Fly   642 APEGSDFSEYVVRYRTDASPWQRISGLHENEARIKDMHYGERYLVQVNTVSFGVESPHPLELNVT 706

  Fly   963 --------------ERNMTLR----------------------KAVFTN---------------- 975
                          .||:||.                      :..|.|                
  Fly   707 MPPQPVSNVVPLVDSRNLTLEWPRPDGHVDFYTLKWWPTDEEDRVEFKNVTQLEDLSSPSVRIPI 771

  Fly   976 --LEENTEYIFRVRAYT---KQGAGPFSDKLIVETERDMGRAPMSLQAEATSEQTAEIWWEPVTS 1035
              |....:|.|.|:|.:   :.|....|.:.:...:.|:      ..|.|..||..:   |.:| 
  Fly   772 EDLSPGRQYRFEVQASSNGIRSGTTHLSTRTMPLIQSDV------FIANAGHEQGQD---ETIT- 826

  Fly  1036 RGKLLGYKIFYTMTAVE----DLDDWQTKTVGLTESADLVN-LEKFAQYAVAIAARFKN------ 1089
                    :.||.|..:    |:..:......:.:...|.| .|:...::.....:..|      
  Fly   827 --------LSYTPTPADSTRFDIYRFSMGDPTIKDKEKLANDTERKLSFSGLTPGKLYNVTVWTV 883

  Fly  1090 --GLGRLSEKVTVRIKPEDVPL-NLRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAMKVFVDSQG 1151
              |:..|..:...|:.|  :|: :|:|..|:...:||.|:     .|......|:...:..|.:.
  Fly   884 SGGVASLPVQRLYRLHP--LPISDLKAIQVAAREITLHWT-----APAGEYTDFELQYLSADEEA 941

  Fly  1152 FSQTQIVPKREIILKHYVKTHTINELSPFTTYNVNV-----SAIPSDYSYRPPTKITVTTQMAAP 1211
            ....|.|.|...|        |:..|.|:..|...|     |...:|::     .::|:|.|.:.
  Fly   942 PQLLQNVTKNTEI--------TLQGLRPYHNYTFTVVVRSGSIQGTDFA-----DVSVSTLMRSS 993

  Fly  1212 QPMV-----------KPDFY---GVVNGEEILVILPQASEEYGPISHYYLVVVPEDKS---NLHK 1259
            .|:.           |.|::   .|..||.......:.:|::|||.::.:.....|.:   :.::
  Fly   994 APISASYQTLTAPPGKVDYFQPSDVQPGEVTFEWSLEPAEQHGPIDYFRITCQNADDAADVSSYE 1058

  Fly  1260 IP---DQFLTDDLLPGRNKPERPNA----------------PYIAAKFPQRS------------I 1293
            .|   .|...|.|:||.:...|..|                |.:|...|:.|            |
  Fly  1059 FPVNATQGKIDGLVPGNHYIFRIQAKSALGYGAEREHIQTMPILAPPVPEPSVTPLEVSRTSSTI 1123

  Fly  1294 PFTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQKHL----------YT-------SSPFS 1341
            ..:|..|...:.|...       :.|.|.:...|......|          ||       ..|::
  Fly  1124 EISFRQGYFSNAHGMV-------RSYTIIIAEDVGKNASGLEMPSWQDVQAYTVWLPYQAIEPYN 1181

  Fly  1342 EFL--------------------SLDMREAPPGERPHRPDPNWPAEPEVSVNRNKDEPEIL---- 1382
            .||                    :.|..:|.....|.|....:    .:.:....||.:..    
  Fly  1182 PFLTSNGSRKSSLEAEHFTIGTANCDKHQAGYCNGPLRAGTTY----RIKIRAFTDEDKFTDTVY 1242

  Fly  1383 ----------WVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMAADLGAGPTPSD 1437
                      .|::...||..::...::|:...:.|.|..:...:.|    .|..:|.|.|.   
  Fly  1243 SSPITTERSDTVIVAATVSAVLLVAMVLVVVYCQHRCQLIRRASKLA----RMQDELAALPE--- 1300

  Fly  1438 PVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIE-PGQQFTWDNSNLEHNK 1501
                   .:.||    :.|:.:.:|:.|...:.::.:.:||:|:|.:: .|:......:||..|:
  Fly  1301 -------GYITP----NRPVHVKDFSEHYRIMSADSDFRFSEEFEELKHVGRDQACSFANLPCNR 1354

  Fly  1502 SKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWEL 1566
            .|||:.|:..|||||.:|..|:...|||||||||..|:.....::.|||||..|..:|||||||.
  Fly  1355 PKNRFTNILPYDHSRFKLQPVDDDDGSDYINANYMPGHNSPREFIVTQGPLHSTREEFWRMCWES 1419

  Fly  1567 KTATIVMMTRLEERTRIKCDQYWPT-RGTETYGQIFVTITETQELATYSIRTFQLCRQGFNDRRE 1630
            .:..|||:||..|:.|.|||||||. |....||.|.|.:........:||..|.:.|.  .:.|.
  Fly  1420 NSRAIVMLTRCFEKGREKCDQYWPVDRVAMFYGDIKVQLIIDTHYHDWSISEFMVSRN--CESRI 1482

  Fly  1631 IKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKH 1695
            ::...||.|||.|||:.|...::|:|..|.:...:..|:||||||||||:|.:|.:|.:|:.:..
  Fly  1483 MRHFHFTTWPDFGVPEPPQSLVRFVRAFRDVIGTDMRPIIVHCSAGVGRSGTFIALDRILQHIHK 1547

  Fly  1696 EKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTH------LQKLLI 1754
            ...:||:|.|..:|.:|.:|||||.||:.||..:| |::.|...:.|.:|..|      :.|:.:
  Fly  1548 SDYVDIFGIVFAMRKERVFMVQTEQQYVCIHQCLL-AVLEGKEHLLADSLELHANDGYEVTKIYL 1611

  Fly  1755 TEPGETISG-MEVEFKKLSNVKMDSSKFVTANLPCNKHKN 1793
            ....:|..| :.:........|:|      |:|..||.::
  Fly  1612 ERQPQTKMGTLPIRASLAMAEKLD------ADLMTNKDED 1645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020 18/64 (28%)
FN3 <382..747 CDD:442628 90/411 (22%)
FN3 712..810 CDD:238020 27/111 (24%)
FN3 832..898 CDD:214495 15/67 (22%)
FN3 <867..1269 CDD:442628 93/536 (17%)
fn3 914..998 CDD:394996 23/177 (13%)
R-PTPc-LAR-1 1498..1735 CDD:350401 103/237 (43%)
R-PTP-LAR-2 1784..2021 CDD:350402 4/10 (40%)
Ptp4ENP_525076.2 FN3 <94..>334 CDD:442628 66/273 (24%)
fn3 247..328 CDD:394996 18/95 (19%)
FN3 319..>749 CDD:442628 92/495 (19%)
fn3 708..796 CDD:394996 12/87 (14%)
fn3 902..978 CDD:394996 20/88 (23%)
fn3 1013..1092 CDD:394996 16/78 (21%)
PTP_tm 1127..1247 CDD:465889 18/130 (14%)
R3-PTPc 1358..1579 CDD:350396 97/222 (44%)
Blue background indicates that the domain is not in the aligned region.

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