DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Epx

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001100507.1 Gene:Epx / 303414 RGDID:1311882 Length:715 Species:Rattus norvegicus


Alignment Length:717 Identity:130/717 - (18%)
Similarity:209/717 - (29%) Gaps:280/717 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly  1091 LGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTPVNYKISFDAM---KVFVDSQGF 1152
            ||.|:..:..::....||                 :||   :||...:..|.:   |:.||: .:
  Rat     8 LGVLATFILTQLAEGTVP-----------------APP---SPVENSVLQDCIAEAKLLVDT-AY 51

  Fly  1153 SQTQ--IVPKREIILKHYVKTHTINELSPFTTYNVNVSAIPSDY--SYRPPTKITVTTQMAAPQP 1213
            ::||  ||.:.:                       :.||.|.|.  .::.|...|.....||   
  Rat    52 NRTQKSIVQRLQ-----------------------SGSASPMDLLAYFKQPVAATRRVVQAA--- 90

  Fly  1214 MVKPDFYGVVNG--EEILVILPQASEEYGPISHYYLVVVPEDK-----------SNLHKIPDQFL 1265
                |:..|..|  ||.|  .||.|.   |.:...::..|:.:           ..:.|..:::.
  Rat    91 ----DYMHVALGLLEEKL--QPQESR---PFNVTDVLTEPQLRLLSQASGCALQDQVEKCSNKYR 146

  Fly  1266 TDDLLPGR-NKPERP--------NAPYIAAKF-PQRSIPFTFHLGSGDDYHNFTNRKLEREKRYR 1320
            |   :.|| |...||        .|.::.|:: ..||:||.:..|             :|...:.
  Rat   147 T---ITGRCNNRRRPWLGASNQALARWLPAEYEDHRSLPFGWTPG-------------KRRNGFL 195

  Fly  1321 I-FVRAV----VDTPQKHLYTSS-------PFSEFLSLDMREAP--------------------- 1352
            : .||||    |..|.|.|.:..       .:.:|:..|:...|                     
  Rat   196 LPLVRAVSNQIVRFPSKKLTSDQGRSLMFMQWGQFIDHDLDFTPESPARVTFNMGVDCEKTCAQL 260

  Fly  1353 PGERPHRPDPNWP-------------AEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCV 1404
            |...|.:..||.|             :.|....||||...:|  ..|...|...:|..:.:.|.:
  Rat   261 PPCFPIKIPPNDPRIKSQRDCIPFFRSAPACPQNRNKVRNQI--NSLTSFVDASMVYGSEVSLAL 323

  Fly  1405 VKRRR----------------------------QPCKTPDQAAVTRPLMAADLGAGPTPSDPVDM 1441
            ..|.|                            .||...::.......:|.|..|..||.     
  Rat   324 RLRNRTNYLGLLATNQQFQDNGRALLPFDNLHEDPCLLTNRLVRIPCFLAGDSRASETPK----- 383

  Fly  1442 RRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQQFTWDNSNL--EHNKSKN 1504
                                 ...:..|...::.:.:.|.:.:.|    .|....|  |..|...
  Rat   384 ---------------------LAALHTLFVREHNRLATELKRLNP----HWSGDKLYNEARKIVG 423

  Fly  1505 RYANVTAYDHSRVQLPAVEG------VVGSDYINANYCDG------------------------Y 1539
            ....:..|   |..||.|.|      .:|.   ...||..                        :
  Rat   424 AMVQIITY---RDFLPLVLGKARMRRTLGP---YRGYCSNVDPRVANVFTLAFRFGHTMLQPFMF 482

  Fly  1540 RKHNAYVATQGP-----LQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQ 1599
            |..:.| .|..|     |...|...||:.:|   ..|..:.|....|..|.::           |
  Rat   483 RLDSQY-RTSAPNSHVLLSSAFFASWRIVYE---GGIDPILRGLMATPAKLNR-----------Q 532

  Fly  1600 IFVTITETQELATYSIRTFQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPP 1664
            ..:.:.|.::.....:|...|.....|.:|.         .|||:|.:.|     .||...|:.|
  Rat   533 DSMLVDELRDKLFQQVRRIGLDLAALNMQRS---------RDHGLPGYNA-----WRRFCGLSQP 583

  Fly  1665 ES 1666
            .:
  Rat   584 RN 585

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020 3/9 (33%)
fn3 1106..1198 CDD:278470 18/98 (18%)
PTPc 1476..1731 CDD:214550 43/228 (19%)
PTPc 1503..1731 CDD:238006 37/199 (19%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
EpxNP_001100507.1 An_peroxidase 145..679 CDD:281139 93/524 (18%)
myeloperoxidase_like 287..699 CDD:188656 63/366 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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