DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and Ptpn18

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_063122948.1 Gene:Ptpn18 / 301333 RGDID:1311586 Length:507 Species:Rattus norvegicus


Alignment Length:286 Identity:97/286 - (33%)
Similarity:147/286 - (51%) Gaps:21/286 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly  1466 IERLKSNDNQK---FSQEYESIEPGQQFTWDNSNL--------EHNKSKNRYANVTAYDHSRVQL 1519
            :|:.::.|:::   .::|:..|: .:...|....:        :.|..||||.:|..||.:||.|
  Rat    12 LEQQEARDHREGAILAREFSDIK-ARSVAWKTEGVCSTKAGSQQGNSKKNRYKDVVPYDETRVIL 75

  Fly  1520 PAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIK 1584
            ..::.....||||||:..|.....||:||||||..|.:||||:.||.....|:|..:..|..|.|
  Rat    76 SLLQEEGHGDYINANFIRGTDGSQAYIATQGPLPHTLLDFWRLVWEFGVKVILMACQETENGRRK 140

  Fly  1585 CDQYW-PTRGTETYGQIFVTIT-ETQELATYSIR----TFQLCRQGFNDRREIKQLQFTAWPDHG 1643
            |::|| ..|.....|...:|:| ||...|..::|    |||...:|..:.|.:.|||:.:|||||
  Rat   141 CERYWAQEREPLQAGPFCITLTKETALTADITLRTLQVTFQKVPKGQKESRPVHQLQYMSWPDHG 205

  Fly  1644 VPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKI---IDIYGHV 1705
            ||......|..:...|.|.....||:.||||||.||||....:|.:.:.:..:.|   ..::..|
  Rat   206 VPSSSDHILTMVEEARCLQGLGPGPLCVHCSAGCGRTGVLCAVDYVRQLLLTQTIPPNFSLFEVV 270

  Fly  1706 TCLRAQRNYMVQTEDQYIFIHDAILE 1731
            ..:|.||...||||:||.|::..:.:
  Rat   271 LEMRKQRPAAVQTEEQYRFLYHTVAQ 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 92/243 (38%)
R-PTP-LAR-2 1784..2021 CDD:350402
Ptpn18XP_063122948.1 None
Blue background indicates that the domain is not in the aligned region.

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