DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and Ptprn2

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_038967789.1 Gene:Ptprn2 / 29714 RGDID:61904 Length:1026 Species:Rattus norvegicus


Alignment Length:958 Identity:216/958 - (22%)
Similarity:333/958 - (34%) Gaps:312/958 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  1019 EATSEQTAEIWWEPVTSRGKLLGYKIFYTMTAVEDLDDWQTKTVGLTESADLVNLEKFAQYAVAI 1083
            |.::...|.:|.|..:|..:.|...        .|.:.|.:..   :|.|....|.::..|...:
  Rat   129 ELSNLPKAYLWHEEASSPARSLQQN--------ADNEKWFSLE---SEVALAKTLRRYLPYLELL 182

  Fly  1084 A-ARFKNGLGRLSEKVTVRIKPED-VPLNLRAHDVSTHSMTLSWSPPIR-------LTPVNYKIS 1139
            : |...|...|:..: |..:|.|| .|.|:..:  ..|:..|::.|..|       |.|:: ::.
  Rat   183 SQAPTANAHPRIDHE-TRPVKGEDSSPENILTY--VAHTSALTYPPATRVKYPDNLLRPLS-RLQ 243

  Fly  1140 FDAMKVFVDSQGFSQTQIVPKREIILKHYVKTHTINELSPFTTYNVNVSAIPSDYSYRPP----- 1199
            .|.:...|||.       :.|:::|                       :|:.:..:.|||     
  Rat   244 PDELSPKVDSD-------IDKQKLI-----------------------AALGAYTAQRPPGENDP 278

  Fly  1200 -TKITVTTQMAAPQPMVKP--------------------------------------DFYGVVNG 1225
             .:..|.:.|.||:|...|                                      |..|.:..
  Rat   279 EPRYLVHSPMRAPRPFAAPALSQRWPLPPGDSKDSLSMGDDTLLRSLLKDLQQQAEVDRLGSLKL 343

  Fly  1226 EEILVILPQASEEYGPI----------SH--------YYLVVVPEDKSNLHKIPD---------- 1262
            ||      ||....|.|          ||        ......||:....|::|:          
  Rat   344 EE------QADSIAGAIQSDPVEGSQESHGRGAEGQLREQADAPEEMLQDHRLPEVDDPAAYKEV 402

  Fly  1263 ---QFLTDDLLPGRNKPERPNAPYI---------AAKFPQRSIPFTFHLGSGDDYHNFTNRK--L 1313
               .|...|||.....|..|.||.:         .::.|:..:.........:...:.|..|  |
  Rat   403 SRLSFKLGDLLKDHGSPLLPEAPLLEKSSRAEMKKSEQPEEVLSSEEETAGVEHVKSRTYSKDLL 467

  Fly  1314 ER-----------EKRYRIFVRAVVDTPQK-HLYTSSPFSEFLSLDMREAPPGERPHRPDPNWPA 1366
            ||           |.:::.....|.:..|. .|....|.|..|.|:::.:...::.:....|.|.
  Rat   468 ERKPNSEPQPWRLEDQFQNRAPEVWEDEQNLKLAAQGPPSGGLQLEVQPSEEEQQGYILTGNNPL 532

  Fly  1367 EPE---------------------------------VSVN--------------RNKDE------ 1378
            .||                                 ||.|              .||||      
  Rat   533 SPEKGKQLMDEVAHLLRVPSSFFADVKVLGPAVIFKVSANIQNMTTADVTKAAVDNKDELEKATG 597

  Fly  1379 ---------PEILWVVLPLM-----VSTFIVSTALIVLCVV------------------------ 1405
                     |:....:||..     .:.|||.|.|.:.|::                        
  Rat   598 LTILQSGIRPKGKLKLLPHPEEQEDSTKFIVLTFLSIACILAVLLASSLAYCLRHNSHYKLKEKL 662

  Fly  1406 ------------KRRRQPCKTPDQAAVTRP-------------LMAADLGAGPTPS--------- 1436
                        :..::.|:   |....||             .:::.|..||.||         
  Rat   663 SGLGADPSADATEAYQELCR---QRMAVRPQDHSEGPHTSRINSVSSQLSDGPMPSPSARSSTSS 724

  Fly  1437 ---DPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESI-----EPGQQFTWD 1493
               :|. ...::..|..||      ::...:|::    |.| :..:|:|::     ||.....  
  Rat   725 WSEEPA-QSNMDISTGHMI------LAYMEDHLK----NKN-RLEKEWEALCAYQAEPDSSLV-- 775

  Fly  1494 NSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINAN-YCDGYRKHNAYVATQGPLQETFV 1557
             :..|.|..|||...|..|||||:.|.:......||||||: ..|...::.||:||||||..|..
  Rat   776 -AQREENAPKNRSLAVLTYDHSRILLKSENSHSNSDYINASPIMDHDPRNPAYIATQGPLPATVA 839

  Fly  1558 DFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVT-ITETQELATYSIRTFQLC 1621
            |||:|.||...|.|||:|.|.|....:|..|||..|:..|....|. ::|......:.:|:|.|.
  Rat   840 DFWQMVWESGCAVIVMLTPLSENGVRQCHHYWPDEGSNVYHVYEVNLVSEHIWCQDFLVRSFYLK 904

  Fly  1622 RQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVI 1686
            ....|:.|.:.|..|.:|.|.|||......|.|.|:........|.|:|||||.|.||:|.|::|
  Rat   905 NLQTNETRTVTQFHFLSWYDQGVPSSTRSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRSGTYVLI 969

  Fly  1687 DSMLERM-KHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAI 1733
            |.:|.:| |..|.|||...:..||.||..||||::|:.|...|:.|.:
  Rat   970 DMVLNKMAKGAKEIDIAATLEHLRDQRPGMVQTKEQFEFALTAVAEEV 1017

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628 58/333 (17%)
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 97/239 (41%)
R-PTP-LAR-2 1784..2021 CDD:350402
Ptprn2XP_038967789.1 RESP18 <102..>148 CDD:464394 5/18 (28%)
Receptor_IA-2 520..608 CDD:463293 11/87 (13%)
R-PTP-N2 738..1020 CDD:350458 107/294 (36%)
Blue background indicates that the domain is not in the aligned region.

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