DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Pxd

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001163633.1 Gene:Pxd / 2768671 FlyBaseID:FBgn0004577 Length:690 Species:Drosophila melanogaster


Alignment Length:797 Identity:156/797 - (19%)
Similarity:253/797 - (31%) Gaps:279/797 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1146 FVDSQGFSQTQ-IVPKREIILKHYVKTHTI-NELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQM 1208
            |.:..|||..| ..|        ||..::: ...:|...::...|...|.|.|..||...|:  .
  Fly    39 FPNYHGFSYLQGSAP--------YVIGNSLPTSPAPQNPFSSPASPPVSAYGYSFPTAGRVS--C 93

  Fly  1209 AAPQPMVKPDFYGVVNGEEILVILP---QASEEYGPISHYYLVVVPEDKSNLHKIPDQFLTDDLL 1270
            |||..:.:...|..::|....:..|   .|:.:||.:      :.|:....: ..|.:.:|.|  
  Fly    94 AAPPAVCEKTAYRTLDGSCNHLEQPGLGVANSKYGRL------LTPKYADGI-SAPTRSVTGD-- 149

  Fly  1271 PGRNKPERPNAPYIA-AKFPQRSIP---FTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQ 1331
                  |.|:|..:: ..|.::.:|   ||.|           |.:..:...:.:.::|.....:
  Fly   150 ------ELPSARLVSLVAFGEQDVPDPEFTLH-----------NMQWGQIMTHDMSMQAGGTQSK 197

  Fly  1332 KH-LYTSSPFSEFLSLDMRE-------APPGERPHRP-------------------DPN-----W 1364
            || ....:.....:.||...       .|    ||.|                   |.|     .
  Fly   198 KHPTRCCTDDGRLIGLDTAHKTCFAIIVP----PHDPAYSQVGTECLNFVRTLTDRDSNCQYQGG 258

  Fly  1365 PAEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALI-----VLCVVKRRRQPCKTPDQAAVTRPL 1424
            |||....|....|        |.|:....|...:.|     ...:|:.|......|....||...
  Fly   259 PAEQLTVVTSYLD--------LSLVYGNSIQQNSDIREFQGGRMIVEERNGAKWLPLSRNVTGDC 315

  Fly  1425 MAADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISE---FANHIERLKSN-DNQKFSQEYESIE 1485
            .|.|.......|..|   |:| |.||:.....|.:.|   .|:.:..|..: |::...||...|.
  Fly   316 DAVDASEVCYRSGDV---RVN-QNPGLAILQTILLREHNRIADALSALNPHYDDRTLFQEARKIN 376

  Fly  1486 PGQ-----QFTWDNSNL-EHNKSKNR---------YAN--------------VTA---YDHSRVQ 1518
            ..|     .:.|....| ..|..|||         |.|              .||   |.||:::
  Fly   377 IAQYQQISYYEWLPIFLGGENMLKNRLIYKAPSGSYINDFDPNIDPSVLNEHATAAFRYFHSQIE 441

  Fly  1519 -----LPAVEGVVG----SDYINA--------NYCDGYRKHNAYVATQGPLQETFVDFWRMCWEL 1566
                 |..:..|:|    ||:.|.        |:....|.|    ||| |.:.|.::|.|     
  Fly   442 GRLDLLSELRQVLGSLTLSDWFNRPGIIEVGDNFDSLTRGH----ATQ-PEELTDINFDR----- 496

  Fly  1567 KTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQLCRQ------GF 1625
                           :||   ::..|....:|.              .:|:..:.|.      .:
  Fly   497 ---------------QIK---HFLFRRNMPFGS--------------DLRSLDIQRNRDHGLASY 529

  Fly  1626 NDRREIKQLQFT-AWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSM 1689
            ||.||...|:.. :|..:|               ..::||                        :
  Fly   530 NDMREFCGLRRAHSWEGYG---------------DLISPP------------------------I 555

  Fly  1690 LERMK-----HEKI-----IDIYGHVT---------CLRAQRNYMVQTEDQYIFIHDAILEAIIC 1735
            ||::|     ||.:     ..:..||.         |:..::.|..:..|::.|.:...|    .
  Fly   556 LEKLKSLYPSHEDVDLTVGASLEAHVAGALAGPTFLCILTEQFYRTRVGDRFFFENGDKL----T 616

  Fly  1736 GVTEVPARNLHTHLQKLLITEPGETISGMEVE-FKKLSNVKMDSSKFVTAN--LPCNKHKNRLVH 1797
            |.|......|.......|:.:.|..||.|:.| |:.:|:          :|  :||:....  |.
  Fly   617 GFTPDQLEELRKASMARLLCDNGNHISSMQPEAFRTVSH----------SNPIIPCSNIPQ--VD 669

  Fly  1798 ILPYESSRVYLT--PIH 1812
            :..:...::|.|  |.|
  Fly   670 LTKWIDQKLYATVDPSH 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470 13/53 (25%)
PTPc 1476..1731 CDD:214550 59/329 (18%)
PTPc 1503..1731 CDD:238006 52/296 (18%)
PTPc 1763..2022 CDD:214550 12/55 (22%)
PTPc 1791..2022 CDD:238006 5/24 (21%)
PxdNP_001163633.1 An_peroxidase 105..643 CDD:281139 123/664 (19%)
peroxinectin_like 260..638 CDD:188655 91/474 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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