DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Ptprs

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:XP_038938979.1 Gene:Ptprs / 25529 RGDID:3452 Length:1926 Species:Rattus norvegicus


Alignment Length:2101 Identity:974/2101 - (46%)
Similarity:1277/2101 - (60%) Gaps:273/2101 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 TWTHPTIVD-----------------AAHPPEIIRKPQNQ-GVRVGGVASFYCAARGDPPPSIVW 69
            || .|::|.                 |..||..||:|::| ||. ||||||.|.|.|||.|.:.|
  Rat     4 TW-RPSVVSVVGPVGLFLVLLARGCLAEEPPRFIREPKDQIGVS-GGVASFVCQATGDPKPRVTW 66

  Fly    70 RKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDK 134
            .|.||||:..:......::..| ::|||:|:|..||:..|||||:|.||: ::..|.||:...|:
  Rat    67 NKKGKKVNSQRFETIDFDESSG-AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQ 129

  Fly   135 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-------- 191
            .|.|||.|..||..:|:|...|..|.|.|.|||.|.|.|.|:...||.|.....:|.        
  Rat   130 LPPGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSESTPI 194

  Fly   192 -GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK----VRRVPPTFSRPPETISEVMLGSN 251
             |.||||:|.|.|||||||||.||.|..:|...||||:    ||||.|.||..|.: .|:|.|.|
  Rat   195 RGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRELREVRRVAPRFSILPMS-HEIMPGGN 258

  Fly   252 LNLSCIAVGSPMPHVKWMKGSEDLTPENEMPIGRNVLQLINIQESANYTCIAASTLGQIDSVSVV 316
            :|::|:|||||||:||||:|:||||||::||:|||||:|.::::||||||:|.|:||.|::|:.:
  Rat   259 VNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQI 323

  Fly   317 KVQSLPTAPTDVQISEVTATSVRLEWSYKGPEDLQYYVIQYKPKNANQAFSEISGIITMYYVVRA 381
            .|:|||.||....::|.||||:.:.|....|:.:.||||:||.|:.:..:.....|.|..|.:..
  Rat   324 TVKSLPKAPGTPVVTENTATSITVTWDSGNPDPVSYYVIEYKSKSQDGPYQIKEDITTTRYSIGG 388

  Fly   382 LSPYTEYEFYVIAVNNIGRGPPSAPATCTTGDFSFGGTKMESAPRNVQVRTLSSSTMVITWEPPE 446
            |||.:|||.:|.|||:||:||||......||:     ....|||||||.|.||::||::.||.|.
  Rat   389 LSPNSEYEIWVSAVNSIGQGPPSESVVTRTGE-----QAPASAPRNVQARMLSATTMIVQWEEPV 448

  Fly   447 TPNGQVTGYKVYYTTNSNQPEASWNSQMVDNSELTTVSELTPHAIYTVRVQAYTSMGAGPMSTPV 511
            .|||.:.||:||||.....|..:|....||:|.||||..|.....|||||.|:||:|.||:|.|:
  Rat   449 EPNGLIRGYRVYYTMEPEHPVGNWQKHNVDDSLLTTVGSLLEDETYTVRVLAFTSVGDGPLSDPI 513

  Fly   512 QVKAQQGVPSQPSNFRATDIGETAVTLQWTKPTHSSENIVHYELYWNDTYANQAHHKRISNSEAY 576
            |||.|||||.||.|.||....||::.|.|:.|  ..|:::.|||.:.:....:...:....:.|:
  Rat   514 QVKTQQGVPGQPMNLRAEAKSETSIGLSWSAP--RQESVIKYELLFREGDRGREVGRTFDPTTAF 576

  Fly   577 TLDGLYPDTLYYIWLAARSQRGEGATTPPIPVRTKQY--GAPPRNITAIATSSTTISLSWLPPPV 639
            .::.|.|:|.|...|||||.:|.||.|..:..||.|.  .|||:::...:..||.|.:||.|||.
  Rat   577 VVEDLKPNTEYAFRLAARSPQGLGAFTAVVRQRTLQAKPSAPPQDVKCTSLRSTAILVSWRPPPP 641

  Fly   640 ERSNGRIIYYKVFFVEVGRED---DEATTMTLNMTSIVLDELKRWTEYKIWVLAGTSVGDGPRSH 701
            |..||.::.|.|.:..:|.||   .|...:....|.|:|:.|::||||::..:|.|.||.||.|.
  Rat   642 ETHNGALVGYSVRYRPLGSEDPDPKEVNNIPPTTTQILLEALEKWTEYRVTAVAYTEVGPGPESS 706

  Fly   702 PIILRTQEDVP-GDPQDVKATPLNSTSIHVSWKPPLEKDRNGIIRGYHIHAQELRDEG------- 758
            |:::||.|||| ..|:.|:|..||:|:|.|.|:.|....::|.||||.:|  .:|.||       
  Rat   707 PVVVRTDEDVPSAPPRKVEAEALNATAIRVLWRSPTPGRQHGQIRGYQVH--YVRMEGAEARGPP 769

  Fly   759 --KGFLNEPFKFDVVDTLEFN--VTGLQPDTKYSIQVAALTRKGDGDRSAAIVVKTPGGVPVRPT 819
              |..:....::::.||.|:.  :|.|||:|.|||.|||.|.||||.||...||.|.|.|..|||
  Rat   770 RIKDIMLADAQWEMDDTAEYEMVITNLQPETAYSITVAAYTMKGDGARSKPKVVVTKGAVLGRPT 834

  Fly   820 VSLKIMEREPIVSIELEWERPAQTYGE-LRGYRLRWGVKDQALKEEMLSGPQMTKKRF-DNLERG 882
            :|   :::.|..|:...||.||....: :.||||::|.:|.|.....|:.   .::|| ....:|
  Rat   835 LS---VQQTPEGSLLARWEPPADAAEDPVLGYRLQFGREDAAPATLELAA---WERRFAAPAHKG 893

  Fly   883 VEYEFRVAGSNHIGIGQETVKIFQTPEGTPGGPP------SNITIRFQTPDVLCVTWDPPTREHR 941
            ..|.||:|.....|:|:|.......||..|.|.|      .|:     :...:.:.|.||....|
  Rat   894 ATYVFRLAARGRAGLGEEASAALSIPEDAPRGFPQILGAAGNV-----SAGSVILRWLPPVPAER 953

  Fly   942 NGIITRYDVQFHKKIDHG------------LGSERNMTLRKAVFTNLEENTEYIFRVRAYTKQGA 994
            ||.|.:|.|...:....|            .|:|..:||:     .|...|.|..||||:|::|.
  Rat   954 NGAIIKYTVSVREAGAPGPATETELAAAAQPGAETALTLQ-----GLRPETAYELRVRAHTRRGP 1013

  Fly   995 GPFSDKLIVETERDMGRAPMSLQAEATSEQTAEIWWEPVTSRGKLLGYKIFYTMTAVEDLDDWQT 1059
            ||||..|.....||                       ||:                         
  Rat  1014 GPFSPPLRYRLARD-----------------------PVS------------------------- 1030

  Fly  1060 KTVGLTESADLVNLEKFAQYAVAIAARFKNGLGRLSEKVTVRIKPEDVPLNLRAHDVSTHSMTLS 1124
                                                            |.|.:...:...|:.||
  Rat  1031 ------------------------------------------------PKNFKVKMIMKTSVLLS 1047

  Fly  1125 WSPPIRL-TPVNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYVKTHTINELSPFTTYNVNVS 1188
            |..|... :|..|||.::.:.:.||.:        ..:::|      ||    |.|.|.||..::
  Rat  1048 WEFPDNYNSPTPYKIQYNGLTLDVDGR--------TTKKLI------TH----LKPHTFYNFVLT 1094

  Fly  1189 AIPSDYSYRPPTKITVTT--QMAAPQPMV--KPDFYGVVNGEEILVILPQASEEYGPISHYYLVV 1249
            ...|.......| :|..|  .|.:.:|.|  |||     |...|:|.||...... .:.:|::|:
  Rat  1095 NRGSSLGGLQQT-VTARTAFNMLSGKPSVAPKPD-----NDGSIVVYLPDGQSPV-TVQNYFIVM 1152

  Fly  1250 VPEDKSN------LHKIPDQFLTDDLLPGRNKPERPN----------APYIAAKFPQRSIPFTFH 1298
            ||..||.      |...|:....::|:...::.:|.:          .|||||:|  ..:|..||
  Rat  1153 VPLRKSRGGQFPILLGSPEDMDLEELIQDLSRLQRRSLRHSRQLEVPRPYIAARF--SILPAVFH 1215

  Fly  1299 LGSGDDYHNFTNRKLEREKRYRIFVRAVVDTPQKH--LYTSSPFSEFLSLDMREAPPGERPHRPD 1361
            .|:...|..|.||.||...||.:||.||:   ||:  .:.:||||:...||           .||
  Rat  1216 PGNQKQYGGFDNRGLEPGHRYVLFVLAVL---QKNEPTFAASPFSDPFQLD-----------NPD 1266

  Fly  1362 PNWPAEPEVSVNRNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQP-CKTPDQAAVTRPLM 1425
            |    :|.|.     .|..::||:.|::...||:   .||:.::..:.:| .|..|....|:.|:
  Rat  1267 P----QPIVD-----GEEGLIWVIGPVLAVVFII---CIVIAILLYKNKPDSKRKDSEPRTKCLL 1319

  Fly  1426 -AADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQQ 1489
             .||| |...|.|||:|||:|||||||:|||||||::.|.|:||||:||:.|.|||||||:||||
  Rat  1320 NNADL-APHHPKDPVEMRRINFQTPGMLSHPPIPITDMAEHMERLKANDSLKLSQEYESIDPGQQ 1383

  Fly  1490 FTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQE 1554
            |||::||||.||.|||||||.|||||||.|..:||::|||||||||.||||:.|||:||||||.|
  Rat  1384 FTWEHSNLEANKPKNRYANVIAYDHSRVILQPLEGIMGSDYINANYVDGYRRQNAYIATQGPLPE 1448

  Fly  1555 TFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTFQ 1619
            ||.|||||.||.::||:||||||||::|:|||||||.|||||||.|.||:.:|.||||:.:|||.
  Rat  1449 TFGDFWRMVWEQRSATVVMMTRLEEKSRVKCDQYWPNRGTETYGFIQVTLLDTMELATFCVRTFS 1513

  Fly  1620 LCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYI 1684
            |.:.|.:::||::..|||||||||||::|.|||.||||.:...||::|||:||||||||||||:|
  Rat  1514 LHKNGSSEKREVRHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPVVVHCSAGVGRTGCFI 1578

  Fly  1685 VIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHL 1749
            |||:||||::.||.:|:|||||.:|:||||||||||||.|||:|:|||:.||.||||||:|:|::
  Rat  1579 VIDAMLERIRTEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAVGCGNTEVPARSLYTYI 1643

  Fly  1750 QKLLITEPGETISGMEVEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGI 1814
            |||...||||.::|||:|||:|::.|..:|:|:||:|||||.|||||:|||||||||.|.||.|:
  Rat  1644 QKLAQVEPGEHVTGMELEFKRLASSKAHTSRFITASLPCNKFKNRLVNILPYESSRVCLQPIRGV 1708

  Fly  1815 EGSDYVNASFIDGYRYRSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWP 1879
            |||||:|||||||||.:.||||.|||:.:..|||||.|||:|||||||||||:|||||||.||||
  Rat  1709 EGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRALWENNSTIVVMLTKLREMGREKCHQYWP 1773

  Fly  1880 HERSVRYQYYVVDPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDFI 1944
            .|||.||||:||||:||||||||.||||||||||||.|||||||||.||||||.|||||||||||
  Rat  1774 AERSARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTVRQFQFTDWPEQGAPKSGEGFIDFI 1838

  Fly  1945 GQVHKTKEQFGQDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQT 2009
            ||||||||||||||||:|||||||||:|||||||||||||:||||:|:||||::||:||||||||
  Rat  1839 GQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQT 1903

  Fly  2010 EDQYHFCYRAALEYLGSFDNY 2030
            ||:|.||::||||||||||:|
  Rat  1904 EDEYQFCFQAALEYLGSFDHY 1924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845 44/94 (47%)
I-set 36..129 CDD:254352 43/93 (46%)
IG_like 146..227 CDD:214653 40/89 (45%)
Ig 159..228 CDD:299845 37/77 (48%)
I-set 234..318 CDD:254352 48/83 (58%)
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216 42/67 (63%)
fn3 324..404 CDD:278470 33/79 (42%)
FN3 423..514 CDD:238020 48/90 (53%)
FN3 520..610 CDD:238020 29/89 (33%)
FN3 616..707 CDD:238020 35/93 (38%)
FN3 712..810 CDD:238020 44/109 (40%)
FN3 832..907 CDD:238020 23/76 (30%)
FN3 914..1005 CDD:238020 31/108 (29%)
FN3 1012..1101 CDD:238020 2/88 (2%)
fn3 1106..1198 CDD:278470 22/92 (24%)
PTPc 1476..1731 CDD:214550 179/254 (70%)
PTPc 1503..1731 CDD:238006 158/227 (70%)
PTPc 1763..2022 CDD:214550 207/258 (80%)
PTPc 1791..2022 CDD:238006 190/230 (83%)
PtprsXP_038938979.1 I-set 33..124 CDD:400151 43/93 (46%)
Ig strand A 33..36 CDD:409353 1/2 (50%)
Ig strand A' 42..45 CDD:409353 1/2 (50%)
Ig strand B 50..57 CDD:409353 4/6 (67%)
Ig strand C 63..68 CDD:409353 1/4 (25%)
Ig strand C' 71..73 CDD:409353 1/1 (100%)
Ig strand D 80..84 CDD:409353 0/3 (0%)
Ig strand E 86..93 CDD:409353 2/7 (29%)
Ig strand F 103..111 CDD:409353 5/7 (71%)
Ig strand G 114..124 CDD:409353 3/10 (30%)
IgI_2_RPTP_IIa_LAR_like 137..232 CDD:409400 43/94 (46%)
Ig strand B 152..156 CDD:409400 1/3 (33%)
Ig strand C 165..169 CDD:409400 1/3 (33%)
Ig strand E 196..200 CDD:409400 2/3 (67%)
Ig strand F 210..215 CDD:409400 4/4 (100%)
Ig strand G 222..225 CDD:409400 0/2 (0%)
IgI_3_RPTP_IIa_LAR_like 245..326 CDD:409401 46/81 (57%)
Ig strand B 259..263 CDD:409401 1/3 (33%)
Ig strand C 272..276 CDD:409401 2/3 (67%)
Ig strand E 293..297 CDD:409401 3/3 (100%)
Ig strand F 305..310 CDD:409401 4/4 (100%)
Ig strand G 318..321 CDD:409401 0/2 (0%)
FN3 329..418 CDD:238020 36/88 (41%)
FN3 425..517 CDD:238020 49/91 (54%)
FN3 522..610 CDD:238020 29/89 (33%)
FN3 618..712 CDD:238020 35/93 (38%)
FN3 720..825 CDD:238020 43/106 (41%)
FN3 833..909 CDD:214495 25/81 (31%)
FN3 935..1023 CDD:238020 29/97 (30%)
FN3 1028..1111 CDD:238020 26/174 (15%)
PTP_tm <1217..1301 CDD:408631 34/109 (31%)
R-PTPc-S-1 1348..1629 CDD:350473 196/280 (70%)
R-PTP-S-2 1631..1920 CDD:350475 226/288 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 422 1.000 Domainoid score I609
eggNOG 1 0.900 - - E2759_KOG4228
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1249 1.000 Inparanoid score I163
OMA 1 1.010 - - QHG47937
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001053
OrthoInspector 1 1.000 - - otm45268
orthoMCL 1 0.900 - - OOG6_100623
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X953
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1110.770

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