DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and pyp2

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_594899.1 Gene:pyp2 / 2542200 PomBaseID:SPAC19D5.01 Length:711 Species:Schizosaccharomyces pombe


Alignment Length:848 Identity:190/848 - (22%)
Similarity:317/848 - (37%) Gaps:223/848 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   963 ERNMTLRKAVFTNLEENTE---YIFRVRAYTKQGAGPFSDKLIVETERDMGRAPMSLQAEATSEQ 1024
            |.|.||:     :.||.||   :|..:|.::|.......:.:.|.....:.|.|           
pombe     9 EFNSTLK-----SFEEQTESVSWIIDLRLHSKYAVSHIKNAINVSLPTALLRRP----------- 57

  Fly  1025 TAEIWWEPVTSRGKL---LGYKIFYTMTAVEDLDDWQTKTVGLTESADLVNLEKFAQYAVAIAAR 1086
            :.:|        ||:   :...:..::..:..:..:.:...|:....|||...:...|:..|.. 
pombe    58 SFDI--------GKVFACIKCNVKVSLDEINAIFLYDSSMAGMNRIYDLVQKFRRGGYSKKIYL- 113

  Fly  1087 FKNGLGRLSEK-----VTVRIKPEDVPLN-----------LRAHDVSTHSMTLS--WSPPIRLTP 1133
            ..||....:..     |:..:..|.||..           |...|.|..|..:|  :|.|:|: |
pombe   114 LSNGFEAFASSHPDAI
VSTEMVKESVPYKIDINENCKLDILHLSDPSAVSTPISPDYSFPLRV-P 177

  Fly  1134 VNYKISFDAMKVFVDSQGFSQTQIVPKREIILKHYVKTHTINELSPFTTYNVNVSAIPSDYSYRP 1198
            :|.........|..|:  ||:          ...:.:....:.|:||:.::...|::.|      
pombe   178 INIPPPLCTPSVVSDT--FSE----------FASHAEYPGFSGLTPFSIHSPTASSVRS------ 224

  Fly  1199 PTKITVTTQMAAPQPMVKPD--FYGVVNGEEILVILPQASEEYGPISHYYLVV-----VPEDKSN 1256
                   .|.....|:..|:  |              ||...|.|||......     .|:::.|
pombe   225 -------CQSIYGSPLSPPNSAF--------------QAEMPYFPISPAISCASSCPSTPDEQKN 268

  Fly  1257 LHKI---PDQFLTDDLLPGRNKPERPNAPYIAAKFPQRSIPFTFHLGSGDDYHNFTNRKLEREKR 1318
            ...:   |.|           .|.||:.         ||:|         .|.:..|::.....|
pombe   269 FFIVGNAPQQ-----------TPARPSL---------RSVP---------SYPSSNNQRRPSASR 304

  Fly  1319 YRIFVRAVVDTPQKHLYTSSPFSEFLSLDMREAPPGERPHRPDPN----------WPAEPEVSVN 1373
            .|.|        ..::.:|:..:..||....|..|.:...| |.|          ...:|.|.::
pombe   305 VRSF--------SNYVKSSNVVNPSLSQASLEIIPRKSMKR-DSNAQNDGTSTMTSKLKPSVGLS 360

  Fly  1374 RNKDEPEILWVVLPLMVSTFIVSTALIVLCVVKRRRQPCKTPDQAAVTRPLMAADLGAGPTPSDP 1438
            ..:|.|:      |               ..::|..:||...:    |:..:.:....||...:|
pombe   361 NTRDAPK------P---------------GGLRRANKPCFNKE----TKGSIFSKENKGPFTCNP 400

  Fly  1439 VDMRRLNFQTPGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQQFTWDNSN-----LE 1498
            ...::        :|.||..:....|     .::...|| :..|.:|..:...:::|.     |.
pombe   401 WGAKK--------VSPPPCEVLADLN-----TASIFYKF-KRLEEMEMTRSLAFNDSKSDWCCLA 451

  Fly  1499 HNKS-----KNRYANVTAYDHSRVQLPAVEGVVGSDYINANYCD-GYRKHNAYVATQGPLQETFV 1557
            .::|     ||||.::..||.:||:|...:|.  ||||||::.| |.:|   |:|.|.|...|.:
pombe   452 SSRSTSISRKNRYTDIVPYDKTRVRLAVPKGC--SDYINASHIDVGNKK---YIACQAPKPGTLL 511

  Fly  1558 DFWRMCWELK--TATIVMMTRLEERTRIKCDQYWPTRGTETY---GQIFVTITETQELATYSIRT 1617
            |||.|.|...  ...|||:|.|.|....||.||||.......   |.:.:::.:.:......:.|
pombe   512 DFWEMVWHNSGTNGVIVMLTNLYEAGSEKCSQYWPDNKDHALCLEGGLRISVQKYETFEDLKVNT 576

  Fly  1618 --FQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRT 1680
              |:|.:.. ...:.|.......|.|...||..:  :..:.||.... |..||:.||||||||||
pombe   577 HLFRLDKPN-GPPKYIHHFWVHTWFDKTHPDIES--ITGIIRCIDKV-PNDGPMFVHCSAGVGRT 637

  Fly  1681 GCYIVIDSMLERMKH--------EKIID-IYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICG 1736
            |.:|.:|.:|:..|:        |...| |:..|..||:||..|||..:|:.|::| :::.:..|
pombe   638 GTFIAVDQILQVPKNILPKTTNLEDSKDFIFNCVNSLRSQRMKMVQNFEQFKFLYD-VVDYLNSG 701

  Fly  1737 VTE 1739
            |.:
pombe   702 VNQ 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020 12/44 (27%)
FN3 1012..1101 CDD:238020 13/96 (14%)
fn3 1106..1198 CDD:278470 21/104 (20%)
PTPc 1476..1731 CDD:214550 91/281 (32%)
PTPc 1503..1731 CDD:238006 84/244 (34%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
pyp2NP_594899.1 DSP_MapKP 4..129 CDD:238723 25/144 (17%)
COG5599 405..709 CDD:227886 97/324 (30%)
PTPc 461..697 CDD:238006 84/245 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 145 1.000 Domainoid score I1146
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3031
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.030

Return to query results.
Submit another query.