DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and ptgs1

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_705942.1 Gene:ptgs1 / 246226 ZFINID:ZDB-GENE-020530-1 Length:597 Species:Danio rerio


Alignment Length:614 Identity:112/614 - (18%)
Similarity:199/614 - (32%) Gaps:221/614 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1159 PKREIILKHYVKTH------TINELSPFTTYNVNVSAIPSDYSYRPPTKITVTTQMAAPQPMVKP 1217
            |...::  ||:.||      .||.            :...|:..|   |:........|.|....
Zfish    84 PSPNVV--HYILTHFDWLWDLINR------------SFLRDWLMR---KVLTVRANLIPSPPTYN 131

  Fly  1218 DFYGVVNGEEILVILPQASEEYGPISHYYLVV--VPED-------KSNLHKIPD-QFLTDDLLPG 1272
            ..|..:|.           |.|..|::|..::  ||.|       |..: |:|| :.|.:..:..
Zfish   132 SRYDYLNW-----------EAYSNITYYTRILPPVPNDCPTPMGTKGKI-KLPDPKLLVEKFMLR 184

  Fly  1273 RN---KPERPNA--PYIAAKFPQR--------SIPFTFHLGSGDDYHNFTNRKLEREKRYRIFVR 1324
            ||   .|:..|.  .:.|..|..:        .:.||..||.|.|..:.....|:|:...|:.  
Zfish   185 RNFRLDPQGTNLMFAFFAQHFTHQFFKTHNRVGLGFTKGLGHGVDAGHIYGDSLDRQLELRLH-- 247

  Fly  1325 AVVDTPQKH------LYTSSPFSEFLSLDMREAPPGERPHRPDPNWPAEPEVSVNRNKDEPEILW 1383
              .|...|:      :|..:    .|...::.:.|        |:.|.|.::::.:.        
Zfish   248 --KDGKLKYQVLNGDIYPPT----VLHAQVKMSYP--------PSVPPEQQLAIGQE-------- 290

  Fly  1384 VVLPLMVSTFIVSTALI----VLCVVKRRRQPCKTPDQAAVTRPLMAADLGAGPTPSDPVDMRRL 1444
             |..|:....:.:|..:    .:|.:.::..|....:|.                          
Zfish   291 -VFGLLPGLGMYATLWLREHNRVCEILKQEHPTWGDEQL-------------------------- 328

  Fly  1445 NFQTPGMI---SHPPIPISEFANHIE--RLKSN------DNQKFS-QEYESIEPGQQFTW----- 1492
             |||..:|   ....|.|.|:..|:.  |||.:      .|.:|. |...|:|..|.:.|     
Zfish   329 -FQTARLIIIGETIRIVIEEYVQHLSGYRLKLHFDPTLLFNSQFQYQNRISVEFNQLYHWHPLMP 392

  Fly  1493 -----DNSNLEHNKSKNRYANVTAYDHSR-VQLPAVE--GVVGSDYINANYCDGYRKHNAYVATQ 1549
                 |..:::::|.....:.:|.|...: |:..:::  |.:|..            ||.:....
Zfish   393 DSFYIDGDHIQYSKFIFNTSILTHYGLEKLVEAFSIQPAGQIGGG------------HNIHPVVS 445

  Fly  1550 GPLQETFVDF----------WRMCWELK--------TATIVMMTRLEE-RTRIKCDQYWP----- 1590
            |..:...|:.          :|..:.||        |....|...||| ...|...:::|     
Zfish   446 GVAERVIVESRELRLQPFNEYRKRFNLKPYTSFAELTGEQEMSKELEELYGHIDAMEFYPALLLE 510

  Fly  1591 -TRGTETYGQIFVTITETQELATYSIRTFQ---LC------------RQGFN--DRREIKQLQF- 1636
             ||....:|:..|.:.     |.:|::...   :|            :.||:  :...:|:|.. 
Zfish   511 KTRPGAVFGESMVEMG-----APFSLKGLMGNPICSPDYWKPSTFGGKTGFDIVNSATLKKLVCL 570

  Fly  1637 -TAWPDHGVPDHPAPFLQFLRRCRALTPP 1664
             |.|         .|::.|      .|||
Zfish   571 NTKW---------CPYVSF------HTPP 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470 8/44 (18%)
PTPc 1476..1731 CDD:214550 45/247 (18%)
PTPc 1503..1731 CDD:238006 37/209 (18%)
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
ptgs1NP_705942.1 EGF 36..68 CDD:278437
prostaglandin_endoperoxide_synthase 90..576 CDD:188648 106/590 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.