DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lar and Ptprg

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_033007.2 Gene:Ptprg / 19270 MGIID:97814 Length:1442 Species:Mus musculus


Alignment Length:1244 Identity:356/1244 - (28%)
Similarity:545/1244 - (43%) Gaps:238/1244 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   935 PPTREHRNGIITRYDVQFHKKIDHGLGSERNMTLRKAVFTNLEE----NTEYI---FR------- 985
            ||..|....|:.|..|..         |...:....::||..::    :.||:   ||       
Mouse   259 PPCSEIVEWIVFRRPVPI---------SYHQLEAFYSIFTTEQQDHVKSVEYLRNNFRPQQALND 314

  Fly   986 -------VRAYTKQGAGPFSDK-LIVETERDMGRAPMSLQAEATSEQTAEI-WWEPVT-SRGKLL 1040
                   ||.........|.|. |..|..:.....|:.::.:..::...:: |.:|.| ....::
Mouse   315 RVVSKSAVRDAWNHDLADFLDNPLGTEASKVCSSPPIHMKVQPLNQTALQVSWSQPETIYHPPIM 379

  Fly  1041 GYKIFYTMTAVEDLDDWQTKTVGLTESAD------LVNLEKFAQYAVAIAARFKNGLGRLSEKVT 1099
            .|.|.|:.|..||     .|....|:.:|      :.::...:.|...:.|..:|.: |.....|
Mouse   380 NYMISYSWTKNED-----EKEKTFTKDSDKDLKATISHVSPDSLYLFRVQAVCRNDM-RSDFSQT 438

  Fly  1100 VRIKPEDVPLNLRAHDVSTHSMTLSWSPPIRLTPVN----------YKISFDAMKVFV-DSQGFS 1153
            :..:.....:......|.|...|.|.:....:.|::          ...||.:|...: .|...|
Mouse   439 MLFQANTTRIFQGTRIVKTGVPTASPASSADMAPISSGSSTWTSSGIPFSFVSMATGMGPSSSGS 503

  Fly  1154 QTQIVPKREIILKHYVKTHTINELSPFTTYNVNVSAIPSD-YSYRPPTK-----------ITVTT 1206
            |..:..         |.|.|:  |:........:|:.||. :..|.||.           :..|.
Mouse   504 QATVAS---------VVTSTL--LAGLGFGGGGISSFPSTVWPTRLPTASAASKQAGRTVLATTE 557

  Fly  1207 QMAAPQPMV----KPDFYGVVNGEEILVILPQASE-EYGPISHYYLVVVPEDKSNLHKIPDQFLT 1266
            .:|:|.|.|    ..|..|...||:     .:.|| |.|...|     ..|:|.:..|...:...
Mouse   558 ALASPGPDVDSAPTKDSEGTEEGEK-----EEKSESEDGEREH-----EEEEKDSEKKEKSEATH 612

  Fly  1267 DDLLPGRNKP-ERPNAPY-IAAKFPQRSIP--FTFHLGSGDDYHNFTNRKLEREKRYRIFVRAVV 1327
            ......|..| ..|::|: .||:...::||  ...|.....|........|:          .:|
Mouse   613 TAAESDRTAPAPTPSSPHRTAAEGGHQTIPGRRQDHSAPATDQPGHVAPDLD----------PLV 667

  Fly  1328 DT--------PQKHLYTSSPFSEFLSLDMREAPPGERPHRPDPNW----------PAEPEVSVNR 1374
            ||        .::|...|.|        .|...|.::|......:          |||...|...
Mouse   668 DTATQVPPTATEEHYSGSDP--------RRPEMPSKKPMSRGDRFSEDSKFITVNPAEKNTSGML 724

  Fly  1375 NKDEPEILWVVLPLMVSTFIVSTALIVLCVV----------------KRRRQ------------- 1410
            ::..|..:..::||:|.:.:....|::|..|                :|.|:             
Mouse   725 SRPSPGRMEWIIPLIVVSALTFVCLVLLIAVLVYWRGCNKIKSKGFPRRSREVPSSGERGEKGSR 789

  Fly  1411 ---------------PCKTPDQAAVTRPLMAADLGAGPTPSDPVDMRRLNFQTPGMISHPPIPIS 1460
                           |...|:::....|:             |.||.             .||:.
Mouse   790 KCFQTAHFYVEDSSSPRVVPNESVPIIPI-------------PDDME-------------AIPVK 828

  Fly  1461 EFANHIERLKSNDNQKFSQEYESIE---PGQQFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAV 1522
            :|..||..|.||....||:::|.::   .....|.::||...||.||||.|:.|||||||:|..:
Mouse   829 QFGKHIGELYSNSQHGFSEDFEEVQRCTADMNITAEHSNHPDNKHKNRYINILAYDHSRVKLRPL 893

  Fly  1523 EGVVG--SDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRLEERTRIKC 1585
            .|...  ||||||||.|||.|..||:||||||:.||.|||||.||..|..|:|:|.|.|:.|.||
Mouse   894 PGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIIMITNLVEKGRRKC 958

  Fly  1586 DQYWPTRGTETYGQIFVTITETQELATYSIRTFQLCR-----------QGFNDRREIKQLQFTAW 1639
            ||||||..||.||.|.||:..|:..|.|::|...:..           :|..:.|.:.|..:|.|
Mouse   959 DQYWPTENTEEYGNIIVTLKSTKVHACYTVRRLSVRNTKVKKGQKGNPKGRQNERTVIQYHYTQW 1023

  Fly  1640 PDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIIDIYGH 1704
            ||.|||::..|.|.|:||..|...|:.|||:|||||||||||.||||||||:::|.:..:::.|.
Mouse  1024 PDMGVPEYALPVLTFVRRSSAARMPDMGPVLVHCSAGVGRTGTYIVIDSMLQQIKDKSTVNVLGF 1088

  Fly  1705 VTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISG---MEV 1766
            :..:|.||||:||||:||||||||:||||:...|||.:..||:::..:||  ||  :.|   :|.
Mouse  1089 LKHIRTQRNYLVQTEEQYIFIHDALLEAILGKETEVSSSQLHSYVNSILI--PG--VGGKTRLEK 1149

  Fly  1767 EFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYRYR 1831
            :||.::.......:..:|...|||.|||...::|.|.:||.|.|:.|::|:||:|||:|.||...
Mouse  1150 QFKLITQCNAKYVECFSAQKECNKEKNRNSSVVPAERARVGLAPLPGMKGTDYINASYIMGYYRS 1214

  Fly  1832 SAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWP-HERSVRYQYYVV---- 1891
            :.:|..|.|:....:|||||:|:||:.|:|||...:.:..:: |.||| .|.|:..:.:.|    
Mouse  1215 NEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDE-FVYWPSREESMNCEAFTVTLIS 1278

  Fly  1892 -DPIAEYNMPQYKLREFKVTDARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDFIGQVHKTKEQFG 1955
             |.:...|..|..:.:|.:...:|.....||.||...||....|.|..  .:.|..:  .:|...
Mouse  1279 KDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAPISST--FELINVI--KEEALT 1339

  Fly  1956 QDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCYRAA 2020
            :|||..||...|...:|:...|:.:.::::.|..:||||..:::...||.:....:||.|.|:|.
Mouse  1340 RDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFVYKAM 1404

  Fly  2021 LEYLGSFDN 2029
            |..:.:.:|
Mouse  1405 LSLISTKEN 1413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628 75/391 (19%)
fn3 914..998 CDD:394996 15/83 (18%)
R-PTPc-LAR-1 1498..1735 CDD:350401 133/249 (53%)
R-PTP-LAR-2 1784..2021 CDD:350402 80/242 (33%)
PtprgNP_033007.2 alpha_CARP_receptor_like 67..319 CDD:239396 13/68 (19%)
FN3 348..438 CDD:238020 17/95 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 461..480 3/18 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 557..726 40/196 (20%)
PRK12495 <613..689 CDD:183558 17/93 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 769..788 2/18 (11%)
R-PTPc-G-1 845..1118 CDD:350505 138/272 (51%)
R-PTP-G-2 1202..1406 CDD:350508 64/208 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1412..1442 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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