DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and Ptpre

DIOPT Version :10

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_001303607.1 Gene:Ptpre / 19267 MGIID:97813 Length:719 Species:Mus musculus


Alignment Length:727 Identity:295/727 - (40%)
Similarity:421/727 - (57%) Gaps:59/727 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly  1336 TSSPFSEFL----SLDMREAPPGERPHRPDPNW------PAEPEVSVNRNKDEPEILWVVLPLMV 1390
            |..||...|    ||.:..|..|......:.||      |.:|..|      :|.:.|::|||::
Mouse    20 TMEPFCPLLLASFSLSLARAGQGNDTTPTESNWTSTTAGPPDPGAS------QPLLTWLLLPLLL 78

  Fly  1391 STFIVSTALIVL-----CVVKR--RRQPCKTPDQAAVTRPLMAADLGAGPTPSDPVDMRRLNFQT 1448
            ..|:::......     .||..  ::.|....::....|.::.:...:||.              
Mouse    79 LLFLLAAYFFRFRKQRKAVVSSNDKKMPNGILEEQEQQRVMLLSRSPSGPK-------------- 129

  Fly  1449 PGMISHPPIPISEFANHIERLKSNDNQKFSQEYESIEPGQ-QFTWDNSNLEHNKSKNRYANVTAY 1512
                ...|||:......|....::|.::|.:|:.|:..|. |.|::.:|.|.|:.||||.|:...
Mouse   130 ----KFFPIPVEHLEEEIRVRSADDCKRFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPN 190

  Fly  1513 DHSRVQLPAVEGVVGSDYINANYCDGYRKHNAYVATQGPLQETFVDFWRMCWELKTATIVMMTRL 1577
            ||.||.|..|:|:..||||||:|.|||::.|.::|.|||.|||..|||||.||.::|||||:|.|
Mouse   191 DHCRVILSQVDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDFWRMVWEQRSATIVMLTNL 255

  Fly  1578 EERTRIKCDQYWPTRGTETYGQIFVTITETQELATYSIRTF----QL---CRQGFNDRREIKQLQ 1635
            :||...||.||||.:|..|||.|.|.:.:...|..|:||.|    ||   |:.    .|.:.||.
Mouse   256 KERKEEKCYQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIHPQLPDSCKA----PRLVSQLH 316

  Fly  1636 FTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVGRTGCYIVIDSMLERMKHEKIID 1700
            ||:|||.|||..|...|:||::.:.|.|..:||::|||||||||||.:||||:|::.:..|:.:|
Mouse   317 FTSWPDFGVPFTPIGMLKFLKKVKTLNPSHAGPIVVHCSAGVGRTGTFIVIDAMMDMIHSEQKVD 381

  Fly  1701 IYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPARNLHTHLQKLLITEPGETISGME 1765
            ::..|:.:|.||..||||:.||.||:.|:||..:.|.||:...:|..|||.|..|.......|:|
Mouse   382 VFEFVSRIRNQRPQMVQTDVQYTFIYQALLEYYLYGDTELDVSSLERHLQTLHSTATHFDKIGLE 446

  Fly  1766 VEFKKLSNVKMDSSKFVTANLPCNKHKNRLVHILPYESSRVYLTPIHGIEGSDYVNASFIDGYRY 1830
            .||:||:||::......|.|||.|..|.|::.|:||:.:||.|:...|.|.:||:|||||||||.
Mouse   447 EEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEFTDYINASFIDGYRQ 511

  Fly  1831 RSAYIAAQGPVQDAAEDFWRMLWEHNSTIVVMLTKLKEMGREKCFQYWPHERSVRYQYYVVDPIA 1895
            :..::|.|||:....||||||:||..|..:||||:::|..::||:||||.|.||.:....::..:
Mouse   512 KDYFMATQGPLAHTVEDFWRMVWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGDITIEIKS 576

  Fly  1896 EYNMPQYKLREFKVT-----DARDGSSRTVRQFQFIDWPEQGVPKSGEGFIDFIGQVHKTKEQFG 1955
            :.......:|:|.||     ..::...|.||||.|..|||.|:|..|:|.||.|..|.|.::|.|
Mouse   577 DTLSEAISVRDFLVTFKQPLARQEEQVRMVRQFHFHGWPEVGIPAEGKGMIDLIAAVQKQQQQTG 641

  Fly  1956 QDGPITVHCSAGVGRSGVFITLSIVLERMQYEGVLDVFQTVRILRSQRPAMVQTEDQYHFCYRAA 2020
             :.|||||||||.||:|.||.||.:|||::.||:|||||.|:.||.|||.||||.:||.|||:..
Mouse   642 -NHPITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVV 705

  Fly  2021 LEYLGSFDNYTN 2032
            .:::..|.:|.|
Mouse   706 QDFIDIFSDYAN 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 I-set 36..129 CDD:400151
Ig strand B 53..57 CDD:409353
Ig strand C 66..70 CDD:409353
Ig strand E 93..97 CDD:409353
Ig strand F 108..113 CDD:409353
Ig strand G 122..125 CDD:409353
Ig 141..228 CDD:472250
Ig strand B 157..161 CDD:409353
Ig strand C 170..174 CDD:409353
Ig strand E 192..196 CDD:409353
Ig strand F 206..211 CDD:409353
Ig strand G 218..221 CDD:409353
IgI_3_RPTP_IIa_LAR_like 237..319 CDD:409401
Ig strand A 237..239 CDD:409401
Ig strand A' 244..248 CDD:409401
Ig strand B 251..259 CDD:409401
Ig strand C 264..270 CDD:409401
Ig strand C' 272..274 CDD:409401
Ig strand D 277..281 CDD:409401
Ig strand E 286..291 CDD:409401
Ig strand F 298..305 CDD:409401
Ig strand G 309..318 CDD:409401
FN3 322..411 CDD:238020
FN3 <382..747 CDD:442628
FN3 712..810 CDD:238020
FN3 832..898 CDD:214495
FN3 <867..1269 CDD:442628
fn3 914..998 CDD:394996
R-PTPc-LAR-1 1498..1735 CDD:350401 120/243 (49%)
R-PTP-LAR-2 1784..2021 CDD:350402 117/241 (49%)
PtpreNP_001303607.1 R-PTPc-E-1 184..412 CDD:350468 113/231 (49%)
PTP_DSP_cys 499..708 CDD:475123 103/209 (49%)
Blue background indicates that the domain is not in the aligned region.

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