DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and T28F4.3

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_492100.1 Gene:T28F4.3 / 189059 WormBaseID:WBGene00012138 Length:490 Species:Caenorhabditis elegans


Alignment Length:362 Identity:95/362 - (26%)
Similarity:157/362 - (43%) Gaps:41/362 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly  1445 NFQTPGMISHPPIPISEFANHIER---------------LK----SNDNQKF--SQEYESIEPGQ 1488
            |.|..|.|......:.:.|:..|:               ||    ||..::|  ::||:.     
 Worm    15 NSQDEGSIQPDKTQLDDVADDAEKKSEKSSNCMIWSQNVLKKAKISNMTREFRNNKEYKP----- 74

  Fly  1489 QFTWDNSNLEHNKSKNRYANVTAYDHSRVQLPAVEGVVGSDYINANYC---DGYRKHNAYVATQG 1550
              ....|..|....||||.::...|.:||.|.  |....:|||:|::.   ||::    :::|||
 Worm    75 --NVTTSISEKMMDKNRYRHIFCGDDNRVVLK--ERDPSNDYIHASWMVMPDGFQ----FISTQG 131

  Fly  1551 PLQETFVDFWRMCWELKTATIVMMTRLEERTRIKCDQYWPTRGTETYGQIFVTITE-TQEL-ATY 1613
            |::.|..|||.|.:..|...|||:.:..|..:.||.:|:.....:.||...|.:.| |.|| ...
 Worm   132 PIKNTIADFWHMVYTEKCHVIVMLCQYIEEDQEKCQRYFSDTSEKEYGDYRVKVVEKTVELWNPV 196

  Fly  1614 SIRTFQLCRQGFNDRREIKQLQFTAWPDHGVPDHPAPFLQFLRRCRALTPPESGPVIVHCSAGVG 1678
            .:...|:.::....:..:....:..|.|...|..|||.::..:  ..|....|.|::||||||||
 Worm   197 KVTGIQVQKKNCPTKHMVYHYFYYDWHDQVAPLDPAPMIKMYK--AVLNKSSSKPIVVHCSAGVG 259

  Fly  1679 RTGCYIVIDSMLERMKHEKIIDIYGHVTCLRAQRNYMVQTEDQYIFIHDAILEAIICGVTEVPAR 1743
            ||..::.|......::....:|:...:..||..|...||::.||:::...::|..|.........
 Worm   260 RTSTFVGIYLSQIMIRENSSVDMVEILKRLRTMRLGAVQSQLQYVYLVVLMIELFIDDKIIKRNA 324

  Fly  1744 NLHTHLQKLLITEPGETISGMEVEFKKLSNVKMDSSK 1780
            |..:.|:|........|.:.||.|.|:....|.:..|
 Worm   325 NYESLLKKYADVTRKVTAAIMEEEEKRRQRKKREEEK 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653
Ig 159..228 CDD:299845
I-set 234..318 CDD:254352
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216
fn3 324..404 CDD:278470
FN3 423..514 CDD:238020
FN3 520..610 CDD:238020
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550 73/261 (28%)
PTPc 1503..1731 CDD:238006 68/232 (29%)
PTPc 1763..2022 CDD:214550 6/18 (33%)
PTPc 1791..2022 CDD:238006
T28F4.3NP_492100.1 PTPc 58..312 CDD:214550 75/268 (28%)
PTPc 86..312 CDD:238006 68/233 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR19134
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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