DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lar and hpx-2

DIOPT Version :9

Sequence 1:NP_001260594.1 Gene:Lar / 35259 FlyBaseID:FBgn0000464 Length:2032 Species:Drosophila melanogaster
Sequence 2:NP_506432.1 Gene:hpx-2 / 179880 WormBaseID:WBGene00008627 Length:718 Species:Caenorhabditis elegans


Alignment Length:472 Identity:86/472 - (18%)
Similarity:137/472 - (29%) Gaps:159/472 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   165 GNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQ-------------IENSREEDQGKYECVAENSMG 216
            |...|:...|.|:...|.:|..:|.....|.             :.:|...|.|..:|.|.||  
 Worm   202 GGELPSARLISNRIHDDRNNQVFSPSINHLHMIIGQFIAHDVVFMPSSVARDGGALDCSACNS-- 264

  Fly   217 TEHSKATNLYVKVRRVPPTFSRPPETISEVM-----------LGSN---LNLSCIAVGSPMPHVK 267
            .:........:.:.|..|.|:.|...::..:           :|.|   |:||.: .||.....:
 Worm   265 PQRVSPNCAPITIPRNDPYFNTPCMRLTRALNGQENFGVRSQIGQNSHFLDLSPV-YGSADCEAE 328

  Fly   268 WMKGSED------------LTPENEMPIGRNVLQLINIQESANYTCIAASTLGQIDSVSVVKVQS 320
            .::..::            |.|:|...        .|.|.||.:.|............:::.|.:
 Worm   329 TVRSFQEGKMLTFDDLGYTLPPQNAND--------SNCQSSAPFHCFTCGDFRNSLHPALIPVHT 385

  Fly   321 L-------------PTAP--TDVQISEVTATSVRLEWSYKGPEDLQY--YVIQYKPKNANQAFSE 368
            :             ...|  .|.||.::....:...|.:     :.|  |:.:|.|:...:.|  
 Worm   386 ILIKEHNRLAEQVRVARPRFNDEQIFQLVRKIMIGMWQH-----IVYNEYIPKYLPRRTIRNF-- 443

  Fly   369 ISGIITMYYVVRALSPYTEYEFYVIAVNNIGRG-----PPSAPATCTTGDFSFGGTKME-SAPRN 427
                        ||.|..         |.:.||     .||..|......|.||.::.. ..|| 
 Worm   444 ------------ALRPLR---------NGVHRGYSTSVDPSISAEFAGAAFRFGHSQSRFDFPR- 486

  Fly   428 VQVRTLSSSTMVITWEPPETPNGQVT-----GYKVYYTTNSNQPEASWNSQMVDNSELTTVSELT 487
                              .|.||:..     |..::|               .|...||.:....
 Worm   487 ------------------LTENGRPAGNYDLGNDIFY---------------ADQMYLTRIGGWE 518

  Fly   488 PHAIYTVRVQA-----YTSMGAGPMSTPVQVKAQQGVPSQPSNF-RATDIG-------------E 533
            |.....||:.|     |.|.|.......::.:...||.....|. |..|:|             .
 Worm   519 PVMNGMVRMPAMKSDRYFSFGIRNQMFEIRGRNGSGVDLVSINIQRGRDMGLFPYIQYRQLVGLP 583

  Fly   534 TAVTLQWTKPTHSSENI 550
            |..:......|.|.|||
 Worm   584 TVTSFNELNTTFSQENI 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LarNP_001260594.1 Ig 35..129 CDD:299845
I-set 36..129 CDD:254352
IG_like 146..227 CDD:214653 15/74 (20%)
Ig 159..228 CDD:299845 15/75 (20%)
I-set 234..318 CDD:254352 18/109 (17%)
Ig3_RPTP_IIa_LAR_like 249..317 CDD:143216 15/82 (18%)
fn3 324..404 CDD:278470 16/88 (18%)
FN3 423..514 CDD:238020 17/100 (17%)
FN3 520..610 CDD:238020 10/45 (22%)
FN3 616..707 CDD:238020
FN3 712..810 CDD:238020
FN3 832..907 CDD:238020
FN3 914..1005 CDD:238020
FN3 1012..1101 CDD:238020
fn3 1106..1198 CDD:278470
PTPc 1476..1731 CDD:214550
PTPc 1503..1731 CDD:238006
PTPc 1763..2022 CDD:214550
PTPc 1791..2022 CDD:238006
hpx-2NP_506432.1 An_peroxidase 158..696 CDD:376988 86/472 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2408
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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